Microsoft (R) Program Maintenance Utility Version 7.00.8882 Copyright (C) Microsoft Corp 1988-2000. All rights reserved. C:\cpanrun-5.8\build\5-8-0\bin\perl.exe "-MExtUtils::Command::MM" "-e" "test_harness(1, 'blib\lib', 'blib\arch')" t\Analysis_soap.t t\AnalysisFactory_soap.t t\Blat.t t\Clustalw.t t\Coil.t t\Consense.t t\DBA.t t\DrawGram.t t\DrawTree.t t\EMBOSS.t t\Eponine.t t\FootPrinter.t t\Genewise.t t\Genscan.t t\Hmmer.t t\Hmmpfam.t t\Lagan.t t\Mdust.t t\Molphy.t t\Neighbor.t t\PAML.t t\Pise.t t\Primate.t t\Primer3.t t\Prints.t t\Profile.t t\Promoterwise.t t\ProtDist.t t\ProtPars.t t\Pseudowise.t t\RepeatMasker.t t\Seg.t t\SeqBoot.t t\Signalp.t t\Sim4.t t\StandAloneFasta.t t\TCoffee.t t\Tmhmm.t t\TribeMCL.t t\Vista.t t\Analysis_soap...........1..17 ok 1 ok 2 Warning: Couldn't connect to http://industry.ebi.ac.uk/soap/soaplab. ------------- EXCEPTION ------------- MSG: STACK Bio::Tools::Run::Analysis::soap::__ANON__ blib/lib/Bio/Tools/Run/Analysis/soap.pm:108 STACK SOAP::Lite::call C:/cpanrun-5.8/build/5-8-0/site/lib/SOAP/Lite.pm:2873 STACK SOAP::Lite::__ANON__ C:/cpanrun-5.8/build/5-8-0/site/lib/SOAP/Lite.pm:2841 STACK Bio::Tools::Run::Analysis::soap::analysis_spec blib/lib/Bio/Tools/Run/Analysis/soap.pm:302 STACK Bio::Tools::Run::Analysis::soap::analysis_name blib/lib/Bio/Tools/Run/Analysis/soap.pm:294 STACK (eval) t\Analysis_soap.t:80 STACK toplevel t\Analysis_soap.t:80 -------------------------------------- ok 3 # skip (probably) because of no network access ok 4 # skip (probably) because of no network access ok 5 # skip (probably) because of no network access ok 6 # skip (probably) because of no network access ok 7 # skip (probably) because of no network access ok 8 # skip (probably) because of no network access ok 9 # skip (probably) because of no network access ok 10 # skip (probably) because of no network access ok 11 # skip (probably) because of no network access ok 12 # skip (probably) because of no network access ok 13 # skip (probably) because of no network access ok 14 # skip (probably) because of no network access ok 15 # skip (probably) because of no network access ok 16 # skip (probably) because of no network access ok 17 # skip (probably) because of no network access ok 15/17 skipped: (probably) because of no network access t\AnalysisFactory_soap....1..8 ok 1 ok 2 ok 3 ok 4 Warning: (Probably) couldn't connect to http://industry.ebi.ac.uk/soap/soaplab. ------------- EXCEPTION ------------- MSG: STACK Bio::Tools::Run::AnalysisFactory::soap::__ANON__ blib/lib/Bio/Tools/Run/AnalysisFactory/soap.pm:103 STACK SOAP::Lite::call C:/cpanrun-5.8/build/5-8-0/site/lib/SOAP/Lite.pm:2873 STACK SOAP::Lite::__ANON__ C:/cpanrun-5.8/build/5-8-0/site/lib/SOAP/Lite.pm:2841 STACK Bio::Tools::Run::AnalysisFactory::soap::available_categories blib/lib/Bio/Tools/Run/AnalysisFactory/soap.pm:233 STACK (eval) t\AnalysisFactory_soap.t:80 STACK toplevel t\AnalysisFactory_soap.t:78 -------------------------------------- ok 5 # skip (Probably) because of no network access ok 6 # skip (Probably) because of no network access ok 7 # skip (Probably) because of no network access ok 8 # skip (Probably) because of no network access ok 4/8 skipped: various reasons t\Blat....................1..11 ok 1 blat program not found. Skipping tests 2 to 11. FAILED tests 2-11 Failed 10/11 tests, 9.09% okay t\Clustalw................1..9 ok 1 ok 2 ok 3 ok 4 # skip Clustalw program not found. Skipping. (Be sure you have clustalw > 1.4) ok 5 # skip Clustalw program not found. Skipping. (Be sure you have clustalw > 1.4) ok 6 # skip Clustalw program not found. Skipping. (Be sure you have clustalw > 1.4) ok 7 # skip Clustalw program not found. Skipping. (Be sure you have clustalw > 1.4) ok 8 # skip Clustalw program not found. Skipping. (Be sure you have clustalw > 1.4) ok 9 # skip Clustalw program not found. Skipping. (Be sure you have clustalw > 1.4) ok 6/9 skipped: various reasons t\Coil....................1..4 Need to define env variable COILSDIR to run test at t\Coil.t line 27. ok 1 # skip Unable to run Coil tests, exe may not be installed or configured properly ok 2 # skip Unable to run Coil tests, exe may not be installed or configured properly ok 3 # skip Unable to run Coil tests, exe may not be installed or configured properly ok 4 # skip Unable to run Coil tests, exe may not be installed or configured properly ok 4/4 skipped: various reasons t\Consense................1..7 ok 1 Consense program not found. Skipping tests 2 to 7. ok 2 # skip consense not found. Skipping. ok 3 # skip consense not found. Skipping. ok 4 # skip consense not found. Skipping. ok 5 # skip consense not found. Skipping. ok 6 # skip consense not found. Skipping. ok 7 # skip consense not found. Skipping. ok 6/7 skipped: various reasons t\DBA.....................1..15 ok 1 DBA program not found. Skipping tests 2 to 15. ok 2 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 3 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 4 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 5 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 6 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 7 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 8 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 9 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 10 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 11 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 12 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 13 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 14 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 15 # skip dba program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 14/15 skipped: various reasons t\DrawGram................1..4 drawgram program not found. Skipping tests 1 to 4. ok 1 # skip drawgram not found. Skipping. ok 2 # skip drawgram not found. Skipping. ok 3 # skip drawgram not found. Skipping. ok 4 # skip drawgram not found. Skipping. ok 4/4 skipped: various reasons t\DrawTree................1..4 drawgram program not found. Skipping tests 1 to 4. ok 1 # skip drawtree not found. Skipping. ok 2 # skip drawtree not found. Skipping. ok 3 # skip drawtree not found. Skipping. ok 4 # skip drawtree not found. Skipping. ok 4/4 skipped: various reasons t\EMBOSS..................1..30 ok 1 ok 2 ok 3 # skip EMBOSS not installed locally or XML::Twig not installed ok 4 # skip EMBOSS not installed locally or XML::Twig not installed ok 5 # skip EMBOSS not installed locally or XML::Twig not installed ok 6 # skip EMBOSS not installed locally or XML::Twig not installed ok 7 # skip EMBOSS not installed locally or XML::Twig not installed ok 8 # skip EMBOSS not installed locally or XML::Twig not installed ok 9 # skip EMBOSS not installed locally or XML::Twig not installed ok 10 # skip EMBOSS not installed locally or XML::Twig not installed ok 11 # skip EMBOSS not installed locally or XML::Twig not installed ok 12 # skip EMBOSS not installed locally or XML::Twig not installed ok 13 # skip EMBOSS not installed locally or XML::Twig not installed ok 14 # skip EMBOSS not installed locally or XML::Twig not installed ok 15 # skip EMBOSS not installed locally or XML::Twig not installed ok 16 # skip EMBOSS not installed locally or XML::Twig not installed ok 17 # skip EMBOSS not installed locally or XML::Twig not installed ok 18 # skip EMBOSS not installed locally or XML::Twig not installed ok 19 # skip EMBOSS not installed locally or XML::Twig not installed ok 20 # skip EMBOSS not installed locally or XML::Twig not installed ok 21 # skip EMBOSS not installed locally or XML::Twig not installed ok 22 # skip EMBOSS not installed locally or XML::Twig not installed ok 23 # skip EMBOSS not installed locally or XML::Twig not installed ok 24 # skip EMBOSS not installed locally or XML::Twig not installed ok 25 # skip EMBOSS not installed locally or XML::Twig not installed ok 26 # skip EMBOSS not installed locally or XML::Twig not installed ok 27 # skip EMBOSS not installed locally or XML::Twig not installed ok 28 # skip EMBOSS not installed locally or XML::Twig not installed ok 29 # skip EMBOSS not installed locally or XML::Twig not installed ok 30 # skip EMBOSS not installed locally or XML::Twig not installed ok 28/30 skipped: various reasons t\Eponine.................1..5 You need at least version 1.2 of JDK to run eponine ok 1 # skip Skipping due to old java version ok 2 # skip Skipping due to old java version ok 3 # skip Skipping due to old java version ok 4 # skip Skipping due to old java version ok 5 # skip Skipping due to old java version ok 5/5 skipped: various reasons t\FootPrinter.............1..18 FootPrinter program not found. Skipping tests 1 to 18. ok 1 # skip FootPrinter program not found. Skipping. ok 2 # skip FootPrinter program not found. Skipping. ok 3 # skip FootPrinter program not found. Skipping. ok 4 # skip FootPrinter program not found. Skipping. ok 5 # skip FootPrinter program not found. Skipping. ok 6 # skip FootPrinter program not found. Skipping. ok 7 # skip FootPrinter program not found. Skipping. ok 8 # skip FootPrinter program not found. Skipping. ok 9 # skip FootPrinter program not found. Skipping. ok 10 # skip FootPrinter program not found. Skipping. ok 11 # skip FootPrinter program not found. Skipping. ok 12 # skip FootPrinter program not found. Skipping. ok 13 # skip FootPrinter program not found. Skipping. ok 14 # skip FootPrinter program not found. Skipping. ok 15 # skip FootPrinter program not found. Skipping. ok 16 # skip FootPrinter program not found. Skipping. ok 17 # skip FootPrinter program not found. Skipping. ok 18 # skip FootPrinter program not found. Skipping. ok 18/18 skipped: various reasons t\Genewise................1..13 ok 1 ok 2 Genewise program not found. Skipping tests 3 to 13. ok 3 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 4 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 5 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 6 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 7 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 8 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 9 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 10 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 11 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 12 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 13 # skip genewise program not found. Skipping. (Be sure you have the wise package > 2.2.0) ok 11/13 skipped: various reasons t\Genscan.................1..4 Need to define env variable GENSCAN_DIR to run test at t\Genscan.t line 28. ok 1 # skip Unable to run Genscan tests, exe may not be installed ok 2 # skip Unable to run Genscan tests, exe may not be installed ok 3 # skip Unable to run Genscan tests, exe may not be installed ok 4 # skip Unable to run Genscan tests, exe may not be installed ok 4/4 skipped: various reasons t\Hmmer...................1..17 ok 1 ok 2 ok 3 hmmpfam program not found. Skipping tests 4 to 17. ok 4 # skip Unable to run Prints tests, exe may not be installed ok 5 # skip Unable to run Prints tests, exe may not be installed ok 6 # skip Unable to run Prints tests, exe may not be installed ok 7 # skip Unable to run Prints tests, exe may not be installed ok 8 # skip Unable to run Prints tests, exe may not be installed ok 9 # skip Unable to run Prints tests, exe may not be installed ok 10 # skip Unable to run Prints tests, exe may not be installed ok 11 # skip Unable to run Prints tests, exe may not be installed ok 12 # skip Unable to run Prints tests, exe may not be installed ok 13 # skip Unable to run Prints tests, exe may not be installed ok 14 # skip Unable to run Prints tests, exe may not be installed ok 15 # skip Unable to run Prints tests, exe may not be installed ok 16 # skip Unable to run Prints tests, exe may not be installed ok 17 # skip Unable to run Prints tests, exe may not be installed ok 14/17 skipped: various reasons t\Hmmpfam.................1..8 ok 1 ok 2 ok 3 hmmpfam program not found. Skipping tests 4 to 8. ok 4 # skip Unable to run Prints tests, exe may not be installed ok 5 # skip Unable to run Prints tests, exe may not be installed ok 6 # skip Unable to run Prints tests, exe may not be installed ok 7 # skip Unable to run Prints tests, exe may not be installed ok 8 # skip Unable to run Prints tests, exe may not be installed ok 5/8 skipped: various reasons t\Lagan...................1..5 ok 1 ok 2 lagan program not found. Skipping tests 3 to 5. ok 3 # skip Unable to run Lagan tests, exe may not be installed ok 4 # skip Unable to run Lagan tests, exe may not be installed ok 5 # skip Unable to run Lagan tests, exe may not be installed ok 3/5 skipped: various reasons t\Mdust...................1..2 ok 1 Mdust not installed Skipping tests 2 to 2. ok 2 # skip Mdust not found. Skpping. ok 1/2 skipped: various reasons t\Molphy..................1..7 Molphy package not installed. Skipping tests 1 to 7. ok 1 # skip Molphy not found. Skipping. ok 2 # skip Molphy not found. Skipping. ok 3 # skip Molphy not found. Skipping. ok 4 # skip Molphy not found. Skipping. ok 5 # skip Molphy not found. Skipping. ok 6 # skip Molphy not found. Skipping. ok 7 # skip Molphy not found. Skipping. ok 7/7 skipped: various reasons t\Neighbor................1..14 ok 1 # skip Neighbor not found. Skipping. ok 2 # skip Neighbor not found. Skipping. ok 3 # skip Neighbor not found. Skipping. ok 4 # skip Neighbor not found. Skipping. ok 5 # skip Neighbor not found. Skipping. ok 6 # skip Neighbor not found. Skipping. ok 7 # skip Neighbor not found. Skipping. ok 8 # skip Neighbor not found. Skipping. ok 9 # skip Neighbor not found. Skipping. ok 10 # skip Neighbor not found. Skipping. ok 11 # skip Neighbor not found. Skipping. ok 12 # skip Neighbor not found. Skipping. ok 13 # skip Neighbor not found. Skipping. ok 14 # skip Neighbor not found. Skipping. ok 14/14 skipped: various reasons t\PAML....................1..17 ok 1 PAML not is installed. skipping tests 2 to 17 ok 2 # skip unable to run all of the PAML tests ok 3 # skip unable to run all of the PAML tests ok 4 # skip unable to run all of the PAML tests ok 5 # skip unable to run all of the PAML tests ok 6 # skip unable to run all of the PAML tests ok 7 # skip unable to run all of the PAML tests ok 8 # skip unable to run all of the PAML tests ok 9 # skip unable to run all of the PAML tests ok 10 # skip unable to run all of the PAML tests ok 11 # skip unable to run all of the PAML tests ok 12 # skip unable to run all of the PAML tests ok 13 # skip unable to run all of the PAML tests ok 14 # skip unable to run all of the PAML tests ok 15 # skip unable to run all of the PAML tests ok 16 # skip unable to run all of the PAML tests ok 17 # skip unable to run all of the PAML tests ok 16/17 skipped: various reasons t\Pise....................1..10 ok 1 ok 2 ok 3 parse: cannot parse this job: not well-formed (invalid token) at line 11, column 19, byte 373 at C:/cpanrun-5.8/build/5-8-0/site/lib/XML/Parser.pm line 185
This server is closed, and does not accept jobs anymore. |