Generated sub tests. go make show_tests to see available subtests External Module Class::MakeMethods::Emulator, Autogeneration of Methods, is not installed on this computer. The Bio::Expression::Microarray* in Bioperl needs it for Saves wear on the wrists & fingers External Module enum, C style enumerated types and bitmask flags in Perl, is not installed on this computer. The in Bioperl needs it for Bio::Microarray::Affymetrix::* Warning: There are some external packages and perl modules, listed above, which bioperl uses. This only effects the functionality which is listed above: the rest of bioperl will work fine. The installation of these external packages is very simple. You can read more about bioperl external dependencies at http://bioperl.org/Core/external.shtml Enjoy the rest of bioperl, which you can use after going 'make install' Checking if your kit is complete... Looks good Writing Makefile for Bio cp Bio/Expression/MicroarrayI.pm blib/lib/Bio/Expression/MicroarrayI.pm cp Bio/Expression/Microarray/Affymetrix/Mas50Data.pm blib/lib/Bio/Expression/Microarray/Affymetrix/Mas50Data.pm cp Bio/Expression/MicroarrayIO/dchipxls.pm blib/lib/Bio/Expression/MicroarrayIO/dchipxls.pm cp Bio/Expression/Microarray/Affymetrix/dChipXLS.pm blib/lib/Bio/Expression/Microarray/Affymetrix/dChipXLS.pm cp Bio/Expression/MicroarrayIO/mas50txt.pm blib/lib/Bio/Expression/MicroarrayIO/mas50txt.pm cp Bio/Expression/Microarray/Affymetrix/dChipArray.pm blib/lib/Bio/Expression/Microarray/Affymetrix/dChipArray.pm cp Bio/Expression/Microarray/Affymetrix/CelArray.pm blib/lib/Bio/Expression/Microarray/Affymetrix/CelArray.pm cp Bio/Expression/MicroarrayIO/affymetrix.pm blib/lib/Bio/Expression/MicroarrayIO/affymetrix.pm cp Bio/Expression/Microarray/Affymetrix/Array.pm blib/lib/Bio/Expression/Microarray/Affymetrix/Array.pm cp Bio/Expression/Microarray/FeatureI.pm blib/lib/Bio/Expression/Microarray/FeatureI.pm cp Bio/Expression/Microarray/Affymetrix/Data.pm blib/lib/Bio/Expression/Microarray/Affymetrix/Data.pm cp Bio/Expression/Microarray/DataI.pm blib/lib/Bio/Expression/Microarray/DataI.pm cp Bio/Expression/Microarray/Affymetrix/Feature.pm blib/lib/Bio/Expression/Microarray/Affymetrix/Feature.pm cp Bio/Expression/Microarray/Affymetrix/Changes.txt blib/lib/Bio/Expression/Microarray/Affymetrix/Changes.txt cp Bio/Expression/Microarray/ArrayI.pm blib/lib/Bio/Expression/Microarray/ArrayI.pm cp Bio/Expression/Microarray/Affymetrix/ArrayDesign.pm blib/lib/Bio/Expression/Microarray/Affymetrix/ArrayDesign.pm cp Bio/Expression/MicroarrayIO.pm blib/lib/Bio/Expression/MicroarrayIO.pm cp Bio/Expression/Microarray/Affymetrix/Mas50TxtArray.pm blib/lib/Bio/Expression/Microarray/Affymetrix/Mas50TxtArray.pm Manifying blib/man3/Bio::Expression::MicroarrayIO::dchipxls.3 Manifying blib/man3/Bio::Expression::Microarray::Affymetrix::dChipXLS.3 Manifying blib/man3/Bio::Expression::Microarray::Affymetrix::Feature.3 Manifying blib/man3/Bio::Expression::MicroarrayIO::mas50txt.3 Manifying blib/man3/Bio::Expression::Microarray::Affymetrix::dChipArray.3 Manifying blib/man3/Bio::Expression::MicroarrayIO::affymetrix.3 Manifying blib/man3/Bio::Expression::Microarray::Affymetrix::Array.3 Manifying blib/man3/Bio::Expression::Microarray::Affymetrix::CelArray.3 Manifying blib/man3/Bio::Expression::Microarray::Affymetrix::ArrayDesign.3 Manifying blib/man3/Bio::Expression::Microarray::FeatureI.3 Manifying blib/man3/Bio::Expression::MicroarrayIO.3 Manifying blib/man3/Bio::Expression::Microarray::Affymetrix::Mas50TxtArray.3 Manifying blib/man3/Bio::Expression::Microarray::Affymetrix::Data.3 PERL_DL_NONLAZY=1 /Users/cpanrun/build/5.10.0/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/affy_u133a_cel.......1..1 # Running under perl version 5.010000 for darwin # Current time local: Sun Dec 16 10:25:05 2007 # Current time GMT: Sun Dec 16 18:25:05 2007 # Using Test.pm version 1.25 Can't locate Bio/Root/Root.pm in @INC (@INC contains: t . /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/bioperl-microarray/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/bioperl-microarray/blib/arch /sw/lib/perl5 /sw/lib/perl5/darwin /Users/cpanrun/build/5.10.0/site/lib /Users/cpanrun/build/5.10.0/lib) at Bio/Expression/Microarray/Affymetrix/Array.pm line 56. BEGIN failed--compilation aborted at Bio/Expression/Microarray/Affymetrix/Array.pm line 56. Compilation failed in require at t/affy_u133a_cel.t line 32. BEGIN failed--compilation aborted at t/affy_u133a_cel.t line 32. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED test 1 Failed 1/1 tests, 0.00% okay t/affy_u133a_stream....1..1 # Running under perl version 5.010000 for darwin # Current time local: Sun Dec 16 10:25:05 2007 # Current time GMT: Sun Dec 16 18:25:05 2007 # Using Test.pm version 1.25 Can't locate Bio/Root/Root.pm in @INC (@INC contains: t . /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/bioperl-microarray/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/bioperl-microarray/blib/arch /sw/lib/perl5 /sw/lib/perl5/darwin /Users/cpanrun/build/5.10.0/site/lib /Users/cpanrun/build/5.10.0/lib) at Bio/Expression/Microarray/Affymetrix/Array.pm line 56. BEGIN failed--compilation aborted at Bio/Expression/Microarray/Affymetrix/Array.pm line 56. Compilation failed in require at t/affy_u133a_stream.t line 32. BEGIN failed--compilation aborted at t/affy_u133a_stream.t line 32. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED test 1 Failed 1/1 tests, 0.00% okay t/affy_u133a_txt.......1..1 # Running under perl version 5.010000 for darwin # Current time local: Sun Dec 16 10:25:05 2007 # Current time GMT: Sun Dec 16 18:25:05 2007 # Using Test.pm version 1.25 Can't locate Bio/Root/Root.pm in @INC (@INC contains: t . /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/bioperl-microarray/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/bioperl-microarray/blib/arch /sw/lib/perl5 /sw/lib/perl5/darwin /Users/cpanrun/build/5.10.0/site/lib /Users/cpanrun/build/5.10.0/lib) at Bio/Expression/Microarray/Affymetrix/Array.pm line 56. BEGIN failed--compilation aborted at Bio/Expression/Microarray/Affymetrix/Array.pm line 56. Compilation failed in require at t/affy_u133a_txt.t line 32. BEGIN failed--compilation aborted at t/affy_u133a_txt.t line 32. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED test 1 Failed 1/1 tests, 0.00% okay Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/affy_u133a_cel.t 2 512 1 2 1 t/affy_u133a_stream.t 2 512 1 2 1 t/affy_u133a_txt.t 2 512 1 2 1 Failed 3/3 test scripts. 3/3 subtests failed. Files=3, Tests=3, 0 wallclock secs ( 0.09 cusr + 0.05 csys = 0.14 CPU) Failed 3/3 test programs. 3/3 subtests failed. make: *** [test_dynamic] Error 2