Set up gcc environment - 3.3 Checking if your kit is complete... Looks good Warning: prerequisite Test::XML::XPath not found. Writing Makefile for Bio::ConnectDots cp lib/Bio/ConnectDots/doc/ConnectorSet.html blib/lib/Bio/ConnectDots/doc/ConnectorSet.html cp lib/Bio/ConnectDots/ConnectorQuery/Inner.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Inner.pm cp lib/Bio/ConnectDots/DotQuery/CsMixin.pm blib/lib/Bio/ConnectDots/DotQuery/CsMixin.pm cp lib/Bio/ConnectDots/DotQuery/InnerCs.pm blib/lib/Bio/ConnectDots/DotQuery/InnerCs.pm cp lib/Bio/ConnectDots/ConnectorSet/gse_sample.pm blib/lib/Bio/ConnectDots/ConnectorSet/gse_sample.pm cp lib/Bio/ConnectDots/ConnectorSet/gse_platform.cnf blib/lib/Bio/ConnectDots/ConnectorSet/gse_platform.cnf cp lib/Bio/ConnectDots/doc/Dot.html blib/lib/Bio/ConnectDots/doc/Dot.html cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CtSource.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CtSource.pm cp lib/Bio/ConnectDots/ConnectorSet.pm blib/lib/Bio/ConnectDots/ConnectorSet.pm cp lib/Bio/ConnectDots/ConnectorSet/MG_U74Bv2_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/MG_U74Bv2_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/gse_series.pm blib/lib/Bio/ConnectDots/ConnectorSet/gse_series.pm cp lib/Bio/ConnectDots/Parser.pm blib/lib/Bio/ConnectDots/Parser.pm cp lib/Bio/ConnectDots/ConnectorSet/gse_probe.pm blib/lib/Bio/ConnectDots/ConnectorSet/gse_probe.pm cp lib/Bio/ConnectDots/ConnectorSet/homologene.cnf1 blib/lib/Bio/ConnectDots/ConnectorSet/homologene.cnf1 cp lib/Bio/ConnectDots/doc/ConnectorQuery.html blib/lib/Bio/ConnectDots/doc/ConnectorQuery.html cp lib/Bio/ConnectDots/DotQuery/InnerCt.pm blib/lib/Bio/ConnectDots/DotQuery/InnerCt.pm cp lib/Bio/ConnectDots/doc/DB.html blib/lib/Bio/ConnectDots/doc/DB.html cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCtJoin.pm.bak1 blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCtJoin.pm.bak1 cp lib/Bio/ConnectDots/ConnectorSet/HG_Focus_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/HG_Focus_annot_csv.cnf cp lib/Bio/ConnectDots/DotQuery/OuterCt.pm blib/lib/Bio/ConnectDots/DotQuery/OuterCt.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCtJoin.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCtJoin.pm cp lib/Bio/ConnectDots/ConnectorSet/gse_probe.cnf blib/lib/Bio/ConnectDots/ConnectorSet/gse_probe.cnf cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CsMixin.pm.not-used blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CsMixin.pm.not-used cp lib/Bio/ConnectDots/scripts/newconnectdot.pl blib/lib/Bio/ConnectDots/scripts/newconnectdot.pl cp lib/Bio/ConnectDots/ConnectDots.pm blib/lib/Bio/ConnectDots/ConnectDots.pm cp lib/Bio/ConnectDots/ConnectorSet/kegg_title.cnf blib/lib/Bio/ConnectDots/ConnectorSet/kegg_title.cnf cp lib/Bio/ConnectDots/Connector.pm blib/lib/Bio/ConnectDots/Connector.pm cp lib/Bio/ConnectDots/ConnectorSet/homologene.pm blib/lib/Bio/ConnectDots/ConnectorSet/homologene.pm cp lib/Bio/ConnectDots/ConnectorTable.pm blib/lib/Bio/ConnectDots/ConnectorTable.pm cp lib/Bio/ConnectDots/ConnectorSet/loc2go.cnf blib/lib/Bio/ConnectDots/ConnectorSet/loc2go.cnf cp lib/Bio/ConnectDots/ConnectorSet/MG_U74Av2_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/MG_U74Av2_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorSet/DoTS.cnf blib/lib/Bio/ConnectDots/ConnectorSet/DoTS.cnf cp lib/Bio/ConnectDots/ConnectorSet/OMIM.pm blib/lib/Bio/ConnectDots/ConnectorSet/OMIM.pm cp lib/Bio/ConnectDots/scripts/load.pl blib/lib/Bio/ConnectDots/scripts/load.pl cp lib/Bio/ConnectDots/ConnectorSet/rgd.pm blib/lib/Bio/ConnectDots/ConnectorSet/rgd.pm cp lib/Bio/ConnectDots/SimpleGraph.pm blib/lib/Bio/ConnectDots/SimpleGraph.pm cp lib/Bio/ConnectDots/ConnectorSet/MG_U74Av2_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/MG_U74Av2_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/loc2cit.pm blib/lib/Bio/ConnectDots/ConnectorSet/loc2cit.pm cp lib/Bio/ConnectDots/SimpleGraph/Traversal.pm blib/lib/Bio/ConnectDots/SimpleGraph/Traversal.pm cp lib/Bio/ConnectDots/DotQuery.pm blib/lib/Bio/ConnectDots/DotQuery.pm cp lib/Bio/ConnectDots/ConnectorSet/loc2go.pm blib/lib/Bio/ConnectDots/ConnectorSet/loc2go.pm cp lib/Bio/ConnectDots/DB/DotSet.pm blib/lib/Bio/ConnectDots/DB/DotSet.pm cp lib/Bio/ConnectDots/ConnectorSet/gse_series.cnf blib/lib/Bio/ConnectDots/ConnectorSet/gse_series.cnf cp lib/Bio/ConnectDots/DB/ConnectDots.pm blib/lib/Bio/ConnectDots/DB/ConnectDots.pm cp lib/Bio/ConnectDots/ConnectorQuery/Alias.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Alias.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCsJoin.pm.bak1 blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCsJoin.pm.bak1 cp lib/Bio/ConnectDots/ConnectorSet/Uniprot.cnf blib/lib/Bio/ConnectDots/ConnectorSet/Uniprot.cnf cp lib/Bio/ConnectDots/ConnectorSet/rgd.cnf blib/lib/Bio/ConnectDots/ConnectorSet/rgd.cnf cp lib/Bio/ConnectDots/ConnectorSet/RefGene.cnf blib/lib/Bio/ConnectDots/ConnectorSet/RefGene.cnf cp lib/Bio/ConnectDots/ConnectorSet/EPconDBmousechip5.pm blib/lib/Bio/ConnectDots/ConnectorSet/EPconDBmousechip5.pm cp lib/Bio/ConnectDots/ConnectorSet/GOA.pm blib/lib/Bio/ConnectDots/ConnectorSet/GOA.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CtConstraint.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CtConstraint.pm cp lib/Bio/ConnectDots/ConnectorSet/gse_sample.cnf blib/lib/Bio/ConnectDots/ConnectorSet/gse_sample.cnf cp lib/Bio/ConnectDots/ConnectorSet/Unigene.cnf blib/lib/Bio/ConnectDots/ConnectorSet/Unigene.cnf cp lib/Bio/ConnectDots/ConnectorSet/Mu11KsubA_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/Mu11KsubA_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorSet/HG_U133B_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/HG_U133B_annot_csv.cnf cp lib/Bio/ConnectDots/DotTable.pm blib/lib/Bio/ConnectDots/DotTable.pm cp lib/Bio/ConnectDots/doc/ConnectDots.html blib/lib/Bio/ConnectDots/doc/ConnectDots.html cp lib/Bio/ConnectDots/ConnectorSet/DoTS.pm blib/lib/Bio/ConnectDots/ConnectorSet/DoTS.pm cp lib/Bio/ConnectDots/ConnectorQuery/Constraint.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Constraint.pm cp lib/Bio/ConnectDots/ConnectorSet/OMIM.cnf blib/lib/Bio/ConnectDots/ConnectorSet/OMIM.cnf cp lib/Bio/ConnectDots/ConnectorSet/HG_U95Av2_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/HG_U95Av2_annot_csv.pm cp lib/Bio/ConnectDots/DotQuery/Constraint.pm blib/lib/Bio/ConnectDots/DotQuery/Constraint.pm cp lib/Bio/ConnectDots/ConnectorSet/GOA.cnf blib/lib/Bio/ConnectDots/ConnectorSet/GOA.cnf cp lib/Bio/ConnectDots/ConnectorSet/MG_U74Bv2_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/MG_U74Bv2_annot_csv.pm cp lib/Bio/ConnectDots/SimpleGraph/Iterator.pm blib/lib/Bio/ConnectDots/SimpleGraph/Iterator.pm cp lib/Bio/ConnectDots/Config.pm blib/lib/Bio/ConnectDots/Config.pm cp lib/Bio/ConnectDots/ConnectorSet/homologene.cnf blib/lib/Bio/ConnectDots/ConnectorSet/homologene.cnf cp lib/Bio/ConnectDots/ConnectorSet/Mu11KsubA_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/Mu11KsubA_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/Mouse430A_2_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/Mouse430A_2_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/Unigene.pm blib/lib/Bio/ConnectDots/ConnectorSet/Unigene.pm cp lib/Bio/ConnectDots/ConnectorSet/IPI.pm blib/lib/Bio/ConnectDots/ConnectorSet/IPI.pm cp lib/Bio/ConnectDots/DB/ConnectorTable.pm blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm cp lib/Bio/ConnectDots/scripts/example_query.pl blib/lib/Bio/ConnectDots/scripts/example_query.pl cp lib/Bio/ConnectDots/ConnectorSet/RG_U34B_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/RG_U34B_annot_csv.pm cp lib/Bio/ConnectDots/Dot.pm blib/lib/Bio/ConnectDots/Dot.pm cp lib/Bio/ConnectDots/ConnectorSet/MG_U74Cv2_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/MG_U74Cv2_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/LocusLink.cnf blib/lib/Bio/ConnectDots/ConnectorSet/LocusLink.cnf cp lib/Bio/ConnectDots/ConnectorSet/HG_U133_Plus_2_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/HG_U133_Plus_2_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorQuery.pm blib/lib/Bio/ConnectDots/ConnectorQuery.pm cp lib/Bio/ConnectDots/DB/DotTable.pm blib/lib/Bio/ConnectDots/DB/DotTable.pm cp lib/Bio/ConnectDots/ConnectorSet/EPconDBhumanchip1.cnf blib/lib/Bio/ConnectDots/ConnectorSet/EPconDBhumanchip1.cnf cp lib/Bio/ConnectDots/scripts/update_connectorsets.pl blib/lib/Bio/ConnectDots/scripts/update_connectorsets.pl cp lib/Bio/ConnectDots/ConnectorSet/RG_U34C_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/RG_U34C_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/LocusLink.pm blib/lib/Bio/ConnectDots/ConnectorSet/LocusLink.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/Source.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/Source.pm cp lib/Bio/ConnectDots/ConnectorSet/Uniprot.pm blib/lib/Bio/ConnectDots/ConnectorSet/Uniprot.pm cp lib/Bio/ConnectDots/ConnectorSet/RG_U34C_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/RG_U34C_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorSet/HG_U133A_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/HG_U133A_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorSet/HG_U133B_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/HG_U133B_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorSet/ENZYME.cnf blib/lib/Bio/ConnectDots/ConnectorSet/ENZYME.cnf cp lib/Bio/ConnectDots/ConnectorSet/Unigene.pm.bk blib/lib/Bio/ConnectDots/ConnectorSet/Unigene.pm.bk cp lib/Bio/ConnectDots/ConnectorSet/EPconDBhumanchip1.pm blib/lib/Bio/ConnectDots/ConnectorSet/EPconDBhumanchip1.pm cp lib/Bio/ConnectDots/ConnectorSet/homologene_xml.cnf blib/lib/Bio/ConnectDots/ConnectorSet/homologene_xml.cnf cp lib/Bio/ConnectDots/ConnectorSet/MG_U74Cv2_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/MG_U74Cv2_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorQuery/Term.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm cp lib/Bio/ConnectDots/ConnectorSet/HG_U133A_2_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/HG_U133A_2_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/loc2cit.cnf blib/lib/Bio/ConnectDots/ConnectorSet/loc2cit.cnf cp lib/Bio/ConnectDots/DB/ConnectorSet.pm blib/lib/Bio/ConnectDots/DB/ConnectorSet.pm cp lib/Bio/ConnectDots/DotQuery/OuterCs.pm blib/lib/Bio/ConnectDots/DotQuery/OuterCs.pm cp lib/Bio/ConnectDots/QueryGraph.pm blib/lib/Bio/ConnectDots/QueryGraph.pm cp lib/Bio/ConnectDots/ConnectorSet/HG_U133_Plus_2_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/HG_U133_Plus_2_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/ENZYME.pm blib/lib/Bio/ConnectDots/ConnectorSet/ENZYME.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/Constraint.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/Constraint.pm cp lib/Bio/ConnectDots/ConnectorSet/Mu11KsubB_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/Mu11KsubB_annot_csv.pm cp lib/Bio/ConnectDots/DotQuery/CtMixin.pm blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm cp lib/Bio/ConnectDots/ConnectorSet/HG_U95Av2_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/HG_U95Av2_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/Mu11KsubB_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/Mu11KsubB_annot_csv.cnf cp lib/Bio/ConnectDots/Util.pm blib/lib/Bio/ConnectDots/Util.pm cp lib/Bio/ConnectDots/DotSet.pm blib/lib/Bio/ConnectDots/DotSet.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCsJoin.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CtCsJoin.pm cp lib/Bio/ConnectDots/ConnectorSet/kegg_title.pm blib/lib/Bio/ConnectDots/ConnectorSet/kegg_title.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CtMixin.pm.not-used blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CtMixin.pm.not-used cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CsRootConstraint.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CsRootConstraint.pm cp lib/Bio/ConnectDots/DotQuery/Term.pm blib/lib/Bio/ConnectDots/DotQuery/Term.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CsCsJoin.pm.bak1 blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CsCsJoin.pm.bak1 cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CsCsJoin.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CsCsJoin.pm cp lib/Bio/ConnectDots/ConnectorQuery/Join.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Join.pm cp lib/Bio/ConnectDots/ConnectorSet/RefGene.pm blib/lib/Bio/ConnectDots/ConnectorSet/RefGene.pm cp lib/Bio/ConnectDots/ConnectorSet/IPI.cnf blib/lib/Bio/ConnectDots/ConnectorSet/IPI.cnf cp lib/Bio/ConnectDots/ConnectorSet/Mouse430A_2_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/Mouse430A_2_annot_csv.pm cp lib/Bio/ConnectDots/SimpleGraph/ShortestPaths.pm blib/lib/Bio/ConnectDots/SimpleGraph/ShortestPaths.pm cp lib/Bio/ConnectDots/ConnectorSet/HG_Focus_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/HG_Focus_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorSet/rgd.scratch blib/lib/Bio/ConnectDots/ConnectorSet/rgd.scratch cp lib/Bio/ConnectDots/ConnectorSet/EPconDBmousechip5.cnf blib/lib/Bio/ConnectDots/ConnectorSet/EPconDBmousechip5.cnf cp lib/Bio/ConnectDots/ConnectorSet/HG_U133A_2_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/HG_U133A_2_annot_csv.pm cp lib/Bio/ConnectDots/doc/cpan.css blib/lib/Bio/ConnectDots/doc/cpan.css cp lib/Bio/ConnectDots/README blib/lib/Bio/ConnectDots/README cp lib/Bio/ConnectDots/DB.pm blib/lib/Bio/ConnectDots/DB.pm cp lib/Bio/ConnectDots/Changes blib/lib/Bio/ConnectDots/Changes cp lib/Bio/ConnectDots/ConnectorSet/Mouse430_2_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/Mouse430_2_annot_csv.pm cp lib/Bio/ConnectDots/scripts/unload.pl blib/lib/Bio/ConnectDots/scripts/unload.pl cp lib/Bio/ConnectDots/ConnectorQuery/Outer.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Outer.pm cp lib/Bio/ConnectDots/DotQuery/Output.pm blib/lib/Bio/ConnectDots/DotQuery/Output.pm cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CsConstraint.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CsConstraint.pm cp lib/Bio/ConnectDots/ConnectorSet/RG_U34A_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/RG_U34A_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorQuery/Operator/Join.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/Join.pm cp lib/Bio/ConnectDots/ConnectorSet/homologene_xml.pm blib/lib/Bio/ConnectDots/ConnectorSet/homologene_xml.pm cp lib/Bio/ConnectDots/ConnectorSet/RG_U34A_annot_csv.pm blib/lib/Bio/ConnectDots/ConnectorSet/RG_U34A_annot_csv.pm cp lib/Bio/ConnectDots/ConnectorSet/Mouse430_2_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/Mouse430_2_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorQuery/Operator/CsSource.pm blib/lib/Bio/ConnectDots/ConnectorQuery/Operator/CsSource.pm cp lib/Bio/ConnectDots/ConnectorSet/RG_U34B_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/RG_U34B_annot_csv.cnf cp lib/Bio/ConnectDots/ConnectorSet/gse_platform.pm blib/lib/Bio/ConnectDots/ConnectorSet/gse_platform.pm cp lib/Bio/ConnectDots/ConnectorSet/HG_U133A_annot_csv.cnf blib/lib/Bio/ConnectDots/ConnectorSet/HG_U133A_annot_csv.cnf Manifying blib/man3/Bio::ConnectDots::ConnectDots.3 Manifying blib/man3/Bio::ConnectDots::SimpleGraph::Iterator.3 Manifying blib/man3/Bio::ConnectDots::ConnectorSet.3 Manifying blib/man3/Bio::ConnectDots::SimpleGraph.3 Manifying blib/man3/Bio::ConnectDots::Connector.3 Manifying blib/man3/Bio::ConnectDots::DB.3 Manifying blib/man3/Bio::ConnectDots::Dot.3 Manifying blib/man3/Bio::ConnectDots::ConnectorQuery.3 PERL_DL_NONLAZY=1 /export/home/cpanrun/build/5.10.0/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/aliasTests........."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. "my" variable $iterator masks earlier declaration in same scope at t/aliasTests.t line 113. "my" variable $row masks earlier declaration in same scope at t/aliasTests.t line 117. "my" variable $answer masks earlier declaration in same scope at t/aliasTests.t line 118. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/aliasTests.t:65 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/collapse..........."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/collapse.t:28 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/concurrentCs......."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. "my" variable $iterator masks earlier declaration in same scope at t/concurrentCs.t line 79. "my" variable $answ masks earlier declaration in same scope at t/concurrentCs.t line 81. "my" variable $iterator masks earlier declaration in same scope at t/concurrentCs.t line 97. "my" variable $answ masks earlier declaration in same scope at t/concurrentCs.t line 101. "my" variable $iterator masks earlier declaration in same scope at t/concurrentCs.t line 104. "my" variable $answ masks earlier declaration in same scope at t/concurrentCs.t line 108. "my" variable $iterator masks earlier declaration in same scope at t/concurrentCs.t line 120. "my" variable $answ masks earlier declaration in same scope at t/concurrentCs.t line 124. "my" variable $iterator masks earlier declaration in same scope at t/concurrentCs.t line 127. "my" variable $answ masks earlier declaration in same scope at t/concurrentCs.t line 131. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/concurrentCs.t:30 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/Connector.........."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. ok 1 - check constructor ok 2 - check name() ok 3 - check put(label, dot) and get_dots(label) ok 4 - check labels() ok 5 - check that put_dots(%dots) adds dots to Connector ok 6 - check that put_dots(%dots) adds this Connector to the dots 1..6 ok t/ConnectorSet......."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 # Creating DB connection -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/ConnectorSet.t:31 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/ctOuterSimple2....."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/ctOuterSimple2.t:65 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/ctTreeOuter........"my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/ctTreeOuter.t:67 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/DB................."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/DB.t:24 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/Dot................Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. ok 1 - calling Dot constructor ok 2 - adding connector with connectors() ok 3 - accessing connectors with connectors() ok 4 - adding connector with put() 1..4 ok t/dotCsTree.........."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/dotCsTree.t:64 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/dotCt2............."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/dotCt2.t:65 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/dotInner..........."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/dotInner.t:65 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/DotQuery..........."my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. ok 1 - testing DotQuery constructor 1..1 ok t/DotSet............."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. ok 1 - calling DotSet constructor ok 2 - check that id2dot() returns something ok 3 - check that id2dot returns hash of translations ok 4 - check that id2dot(id, Dot) returns a Dot object on insertion ok 5 - check id2dot(id) for proper return ok 6 - checking instances() ok 7 - check lookup(id) for proper return ok 8 - check that lookup_connect(id, Connector) adds the connector 1..8 ok t/obsoleteTables....."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. "my" variable $HELP masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $VERBOSE masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $ECHO_CMD masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $DATABASE masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $HOST masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $USER masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $PASSWORD masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $LOADDIR masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $LOADSAVE masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $CREATE masks earlier declaration in same scope at t/obsoleteTables.t line 56. "my" variable $JUST_CREATE masks earlier declaration in same scope at t/obsoleteTables.t line 56. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/obsoleteTables.t:72 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/output_xml........."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Can't locate XML/XPath.pm in @INC (@INC contains: . ../blib ../lib ./t blib/lib /export/home/cpanrun/depot/main/contrib-patched/perl/CPAN/src/Bio-ConnectDots/blib/lib /export/home/cpanrun/depot/main/contrib-patched/perl/CPAN/src/Bio-ConnectDots/blib/arch /export/home/cpanrun/build/5.10.0/site/lib /export/home/cpanrun/build/5.10.0/lib) at (eval 154) line 2. BEGIN failed--compilation aborted at (eval 154) line 2. Compilation failed in require at t/output_xml.t line 13. BEGIN failed--compilation aborted at t/output_xml.t line 13. # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/Parser............."my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. ok 1 - check Parser constructor ok 2 - check parse_constraint(...) on = ok 3 - check parse_constraint(...) on <= and whitespace ok 4 - check parse_constraints(list_of_constraints) ok 5 - check parse_join(join) ok 6 - check parse_join(join) seperated by non-word char ok 7 - check parse_joins(join AND join) ok 8 - check parse_alias with seperator: AS ok 9 - check parse_alias() with seperator: space ok 10 - check parse_aliases() for list of aliases ok 11 - check parse_term1(*) ok 12 - check parse_term1(word) with want_tree rule verification ok 13 - check parse_term1(quoted_phrase) with want_tree rule verification Use of uninitialized value in length at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 668. Use of uninitialized value in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 668. Use of uninitialized value in pattern match (m//) at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 674. Use of uninitialized value in substr at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 684. Use of uninitialized value in pattern match (m//) at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 722. Use of uninitialized value in substr at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 724. Use of uninitialized value in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 728. Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. ok 14 - check parse_term1(list) with want_tree rule verification Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. ok 15 - check parse_term(term1) Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. ok 16 - check parse_term(term1.term1) Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. ok 17 - check parse_term(term1.term1.term1) ok 18 - check parse_op() for one operator ok 19 - check parse_op() for one operator Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. ok 20 - check parse_constant() on single word Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. Use of uninitialized value $_ in scalar assignment at /export/home/cpanrun/build/5.10.0/lib/Text/Balanced.pm line 169. ok 21 - check parse_constant() on list ok 22 - check parse_output(word.word) ok 23 - check parse_output(word.word AS alias) ok 24 - check parse_qword() ok 25 - check parse_qword() 1..25 ok t/previewTest........"my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/previewTest.t:65 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/testMakeAndLoad...."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 Can't call method "selectall_arrayref" on an undefined value at t/testMakeAndLoad.t line 12. # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/testRemoveCs......."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. "my" variable $HELP masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $VERBOSE masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $ECHO_CMD masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $DATABASE masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $HOST masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $USER masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $PASSWORD masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $LOADDIR masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $LOADSAVE masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $CREATE masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $JUST_CREATE masks earlier declaration in same scope at t/testRemoveCs.t line 52. "my" variable $iterator masks earlier declaration in same scope at t/testRemoveCs.t line 111. "my" variable $iterator masks earlier declaration in same scope at t/testRemoveCs.t line 123. "my" variable $iterator masks earlier declaration in same scope at t/testRemoveCs.t line 133. "my" variable $iterator masks earlier declaration in same scope at t/testRemoveCs.t line 140. "my" variable $gone masks earlier declaration in same scope at t/testRemoveCs.t line 152. "my" variable $iterator masks earlier declaration in same scope at t/testRemoveCs.t line 153. Name "Bio::ConnectDots::SimpleGraph::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::SimpleGraph::Traversal::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::SimpleGraph::Traversal::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::Traversal::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::SimpleGraph::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::SimpleGraph::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotTable::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotTable::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotTable::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Connector::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Connector::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Connector::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Connector::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::ConnectorSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Dot::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::Dot::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Dot::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Dot::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Dot::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectDots::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectDots::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectDots::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::Parser::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::Parser::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::Parser::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::Parser::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DB::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DB::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DB::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DB::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DB::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Output::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Output::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Output::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CsMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CsMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::CtMixin::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::CtMixin::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::CtMixin::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::OuterCs::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::OuterCs::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::OuterCs::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::OuterCs::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotQuery::InnerCt::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotQuery::InnerCt::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotQuery::InnerCt::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::DotQuery::InnerCt::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::DEFAULTS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 160. Name "Bio::ConnectDots::DotSet::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::DotSet::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::DotSet::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::DotSet::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Term::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Term::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Term::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Alias::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Alias::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Alias::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Alias::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Inner::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Inner::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Inner::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Inner::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Inner::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Outer::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Outer::DEFAULTS_ARGS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 169. Name "Bio::ConnectDots::ConnectorQuery::Outer::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Outer::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Join::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. Name "Bio::ConnectDots::ConnectorQuery::Join::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Join::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::ANCESTORS" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 183. Name "Bio::ConnectDots::ConnectorQuery::Constraint::FORCE_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 197. Name "Bio::ConnectDots::ConnectorQuery::Constraint::CAN_NEW" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 190. Name "Bio::ConnectDots::ConnectorQuery::Constraint::AUTODB" used only once: possible typo at /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm line 176. DBI connect('dbname=template1;','dburdick',...) failed: could not connect to server: No such file or directory Is the server running locally and accepting connections on Unix domain socket "/tmp/.s.PGSQL.5432"? at t/DBConnector.pm line 45 -------------------- EXCEPTION -------------------- MSG: DBI::connect failed for dsn=DBI:Pg:dbname=ctd_unittest;host=yuki;, username=dburdick: could not translate host name "yuki" to address: host/servname not known STACK Bio::ConnectDots::DB::_connect blib/lib/Bio/ConnectDots/DB.pm:156 STACK Bio::ConnectDots::DB::_init_self blib/lib/Bio/ConnectDots/DB.pm:112 STACK Class::AutoClass::_init /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:45 STACK Class::AutoClass::new /export/home/cpanrun/build/5.10.0/site/lib/Class/AutoClass.pm:30 STACK toplevel t/testRemoveCs.t:68 ------------------------------------------- # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) t/Util...............ok 1 - check joindef() ok 2 - check value_as_string($atomic) ok 3 - check value_as_string(\@list) ok 4 - check value_as_string(\%hash) ok 5 - check is_number(number) ok 6 - check is_number(!number) ok 7 - check is_alpha(alpha) ok 8 - check is_number(!alpha) ok 9 - check min(list) ok 10 - check max(list) ok 11 - check minmax(list) ok 12 - check mina(list) ok 13 - check maxa(list) ok 14 - check minmaxa(list) ok 15 - check minb(list) ok 16 - check maxb(list) ok 17 - check minmaxb(list) ok 18 - check avg() ok 19 - check mean() ok 20 - check mean() ok 21 - check eq_list() on equal lists ok 22 - check eq_list() on unequal lists of same length ok 23 - check eq_list() on unequal lists of different length ok 24 - check uniq(list) 1..24 ok t/xml_rows..........."my" variable $name masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DB/DotSet.pm line 39. "my" variable $rest masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/Parser.pm line 46. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 101. "my" variable $rest masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/Parser.pm line 144. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/Term.pm line 36. "my" variable $key_index masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery.pm line 123. "my" variable $cs masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/DotQuery/CtMixin.pm line 41. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/DotTable.pm line 101. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 65. "my" variable $i masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery/Term.pm line 77. "my" variable $term masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 95. "my" variable $alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 106. "my" variable $old_alias masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectorQuery.pm line 107. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectorTable.pm line 100. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $skip masks earlier declaration in same statement at blib/lib/Bio/ConnectDots/DB/ConnectDots.pm line 46. "my" variable $VERSION masks earlier declaration in same scope at blib/lib/Bio/ConnectDots/ConnectDots.pm line 26. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 41. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 52. Unquoted string "temp" may clash with future reserved word at t/MakeAndLoad.pm line 55. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 60. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 61. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 62. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 63. Unquoted string "cnf" may clash with future reserved word at t/MakeAndLoad.pm line 64. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 69. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 70. Unquoted string "pm" may clash with future reserved word at t/MakeAndLoad.pm line 71. Can't locate XML/XPath.pm in @INC (@INC contains: . ../blib ../lib ./t blib/lib /export/home/cpanrun/depot/main/contrib-patched/perl/CPAN/src/Bio-ConnectDots/blib/lib /export/home/cpanrun/depot/main/contrib-patched/perl/CPAN/src/Bio-ConnectDots/blib/arch /export/home/cpanrun/build/5.10.0/site/lib /export/home/cpanrun/build/5.10.0/lib) at (eval 154) line 2. BEGIN failed--compilation aborted at (eval 154) line 2. Compilation failed in require at t/xml_rows.t line 13. BEGIN failed--compilation aborted at t/xml_rows.t line 13. # Looks like your test died before it could output anything. dubious Test returned status 255 (wstat 65280, 0xff00) Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/ConnectorSet.t 255 65280 ?? ?? ?? t/DB.t 255 65280 ?? ?? ?? t/aliasTests.t 255 65280 ?? ?? ?? t/collapse.t 255 65280 ?? ?? ?? t/concurrentCs.t 255 65280 ?? ?? ?? t/ctOuterSimple2.t 255 65280 ?? ?? ?? t/ctTreeOuter.t 255 65280 ?? ?? ?? t/dotCsTree.t 255 65280 ?? ?? ?? t/dotCt2.t 255 65280 ?? ?? ?? t/dotInner.t 255 65280 ?? ?? ?? t/obsoleteTables.t 255 65280 ?? ?? ?? t/output_xml.t 255 65280 ?? ?? ?? t/previewTest.t 255 65280 ?? ?? ?? t/testMakeAndLoad.t 255 65280 ?? ?? ?? t/testRemoveCs.t 255 65280 ?? ?? ?? t/xml_rows.t 255 65280 ?? ?? ?? Failed 16/22 test scripts. 0/68 subtests failed. Files=22, Tests=68, 26 wallclock secs (22.77 cusr + 2.71 csys = 25.48 CPU) Failed 16/22 test programs. 0/68 subtests failed. make: *** [test_dynamic] Error 255