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Writing Makefile for Chemistry::Mol

Microsoft (R) Program Maintenance Utility Version 7.10.3077
Copyright (C) Microsoft Corporation.  All rights reserved.

cp Atom.pm blib\lib\Chemistry\Atom.pm
cp Bond.pm blib\lib\Chemistry\Bond.pm
cp File.pm blib\lib\Chemistry\File.pm
cp Obj.pm blib\lib\Chemistry\Obj.pm
cp Tutorial.pod blib\lib\Chemistry\Tutorial.pod
cp File/Dumper.pm blib\lib\Chemistry\File\Dumper.pm
cp Mol.pm blib\lib\Chemistry\Mol.pm
cp File/Formula.pm blib\lib\Chemistry\File\Formula.pm

Microsoft (R) Program Maintenance Utility Version 7.10.3077
Copyright (C) Microsoft Corporation.  All rights reserved.

	C:\cpanrun\build\5-10-0\bin\perl.exe "-MExtUtils::Command::MM" "-e" "test_harness(1, 'blib\lib', 'blib\arch')" t/*.t
t/add_implicit_h....1..21
ok 1 - _calc_implicit_hydrogens(C 1 0 0) == 3
ok 2 - _calc_implicit_hydrogens(C 4 0 0) == 0
ok 3 - _calc_implicit_hydrogens(C 1 1 0) == 2
ok 4 - _calc_implicit_hydrogens(C 1 -1 0) == 2
ok 5 - _calc_implicit_hydrogens(C 1 0 1) == 1
ok 6 - _calc_implicit_hydrogens(C 1 0 3) == 1
ok 7 - _calc_implicit_hydrogens(C 1 0 2) == 2
ok 8 - _calc_implicit_hydrogens(O 1 -1 0) == 0
ok 9 - _calc_implicit_hydrogens(O 1 1 0) == 2
ok 10 - _calc_implicit_hydrogens(N 4 1 0) == 0
ok 11 - _calc_implicit_hydrogens(N 2 1 0) == 2
ok 12 - _calc_implicit_hydrogens(N 2 -1 0) == 0
ok 13 - _calc_implicit_hydrogens(N 1 0 3) == 0
ok 14 - _calc_implicit_hydrogens(B 1 -1 0) == 3
ok 15 - _calc_implicit_hydrogens(Cl 0 -1 0) == 0
ok 16 - _calc_implicit_hydrogens(Cl 0 0 0) == 1
ok 17 - _calc_implicit_hydrogens(Cl 0 0 2) == 0
ok 18 - _calc_implicit_hydrogens(Cl 0 1 0) == 1
ok 19 - C==1
ok 20 - O==0
ok 21 - N==2
ok
t/Atom..............1..49
ok 1 - use Chemistry::Atom;
ok 2 - use Chemistry::Mol;
ok 3 - use Math::VectorReal;
ok 4 - blank atom isa Chemistry::Atom
ok 5 - blank atom isa Chemistry::Obj
ok 6 - symbol -> symbol
ok 7 - symbol -> Z
ok 8 - Z -> Z
ok 9 - Z -> symbol
ok 10 - default mass
ok 11 - arbitrary mass
ok 12 - aromatic default
ok 13 - aromatic
ok 14 - hydrogens default
ok 15 - total_hydrogens default
ok 16 - implicit_hydrogens default
ok 17 - hydrogens
ok 18 - implicit_hydrogens
ok 19 - total_hydrogens
ok 20 - hydrogens
ok 21 - implicit_hydrogens
ok 22 - total_hydrogens
ok 23 - explicit_valence
ok 24 - valence
ok 25 - hydrogens
ok 26 - implicit_hydrogens
ok 27 - total_hydrogens
ok 28 - explicit_valence
ok 29 - valence
ok 30 - hydrogens
ok 31 - implicit_hydrogens
ok 32 - total_hydrogens
ok 33 - explicit_valence
ok 34 - valence
ok 35 - distance(coords(arrayref))
ok 36 - The object isa Math::VectorReal
ok 37 - distance(coords(vector))
ok 38 - distance(coords(list))
ok 39 - x3
ok 40 - y3
ok 41 - z3
ok 42 - distance(vector)
ok 43 - sprintf - %s
ok 44 - sprintf - %Z
ok 45 - sprintf - %x,%y,%z
ok 46 - 1H mass
ok 47 - 2H mass number
ok 48 - 2H mass
ok 49 - 10H mass
ok
t/Bond..............1..17
ok 1 - mol atom count
ok 2 - mol bond count
ok 3 - bond atom count
ok 4 - atom bond count
ok 5 - atom bond count
ok 6 - deleted the bond
ok 7 - mol atom count
ok 8 - mol bond count
ok 9 - bond atom count
ok 10 - atom bond count
ok 11 - atom bond count
ok 12 - readded the bond
ok 13 - mol atom count
ok 14 - mol bond count
ok 15 - bond atom count
ok 16 - atom bond count
ok 17 - atom bond count
ok
t/change_id.........1..5
ok 1 - The object isa Chemistry::Mol
ok 2 - id before
ok 3 - id matches before
ok 4 - id after
ok 5 - id matches after
ok
t/compat............1..1
ok 1
ok
t/delete............1..8
ok 1 - The object isa Chemistry::Mol
ok 2 - atoms before
ok 3 - bonds before
ok 4 - delete bond
ok 5 - delete atom obj - bonds
ok 6 - delete atom obj - atoms
ok 7 - delete atom index - bonds
ok 8 - delete atom index - atoms
ok
t/Dumper............1..6
ok 1 - use Chemistry::File::Dumper;
ok 2 - read isa Chemistry::Mol
ok 3 - read (autodetect) isa Chemistry::Mol
ok 4 - dump and compare
ok 5 - write and read and compare
ok 6 - deep compare
ok
t/exception.........1..10
ok 1 - unknown format (read)
ok 2 - no class installed
ok 3 - can't open
ok 4 - unknown format (write)
ok 5 - unknown descriptor (bogus)
ok 6 - three atoms needed for angle
ok 7 - four atoms needed for dihedral
ok 8 - distance to non-object
ok 9 - angle to non-object
ok 10 - angle to funny object
ok
t/File..............1..15
ok 1 - use Chemistry::File;
ok 2 - The object isa Chemistry::File
ok 3 - The object isa Chemistry::File::Dumper
ok 4 - read file isa Chemistry::Mol
ok 5 - atoms
ok 6 - read string isa Chemistry::Mol
ok 7 - atoms
ok 8 - read mollist
ok 9 - list name
ok 10 - list footer
ok 11 - mol name
ok 12 - mol price
ok 13 - The object isa Chemistry::File::Dumper
ok 14 - Chemistry::Mol->read isa Chemistry::Mol
ok 15 - atoms
ok
t/Formula...........1..14
ok 1 - use Chemistry::File::Formula;
ok 2 - parse isa mol isa Chemistry::Mol
ok 3 - enough atoms
ok 4 - formula format
ok 5 - formula hash 1[Ph(Me)3]2
ok 6 - CH3(CH2)3CH3 = C5H12
ok 7 - C6H3Me3 = C9H12
ok 8 - 2Cu[NH3]4(NO3)2 = Cu2H24N12O12
ok 9 - 2C(C[C<C>5]4)3 = C152
ok 10 - 2C(C(C(C)5)4)3 = C152
ok 11 - C 1 0 H 2 2 = C10H22
ok 12 - CH3Br = CH3Br
ok 13 - parse_formula
ok 14 - formula_sort
ok
t/geom..............1..10
ok 1 - The object isa Chemistry::Mol
ok 2 - three atoms
ok 3 - angle
ok 4 - dihedral
ok 5 - zero angle
ok 6 - bad angle
ok 7 - bad angle
ok 8 - linear angle
ok 9 - bad dihedral
ok 10 - bad dihedral
ok
t/graph.............1..11
ok 1 - clone
ok 2 - got 2 things
ok 3 - separate: two mols
ok 4 - mol 1 is CClH2
ok 5 - mol 2 is CHO2
ok 6 - bond count for a2 equal to a2 (3)?
ok 7 - The object isa Chemistry::Mol
ok 8 - combine-new; atoms
ok 9 - combine-new; bonds
ok 10 - combine-new; formula
ok 11 - combine-in place
ok
t/mem...............1..8
ok 1 - The object isa Chemistry::Mol
ok 2 - atoms before
ok 3 - delete one atom - atoms
ok 4 - delete one atom - bonds
ok 5 - delete one atom - mols
ok 6 - out of scope - atoms
ok 7 - out of scope - bonds
ok 8 - out of scope - mols
ok
t/Mol...............1..20
ok 1 - use Chemistry::Mol;
ok 2 - $mol isa Chemistry::Mol
ok 3 - $mol isa Chemistry::Obj
ok 4 - $atom isa Chemistry::Atom
ok 5 - $atom isa Chemistry::Obj
ok 6 - $bond isa Chemistry::Bond
ok 7 - $bond isa Chemistry::Obj
ok 8 - $mol->atoms
ok 9 - $mol->atoms(1) eq $atom
ok 10 - $mol->by_id
ok 11 - $mol->atoms_by_name
ok 12 - $mol->bonds
ok 13 - $mol->bonds(1) eq $bond
ok 14 - $mol->new_atom
ok 15 - $mol->mass
ok 16 - $mol->mass
ok 17 - before sprout_hydrogens
ok 18 - after sprout_hydrogens
ok 19 - before sprout_hydrogens
ok 20 - $bond->length
ok
t/Obj...............1..19
ok 1 - use Chemistry::Obj;
ok 2 - blank obj isa Chemistry::Obj
ok 3 - name
ok 4 - joe01
ok 5 - type
ok 6 - stringify
ok 7 - eq
ok 8 - !=
ok 9 - ==
ok 10 - ne
ok 11 - attr
ok 12 - attr list
ok 13 - attr list
ok 14 - attr hashref
ok 15 - attr hashref
ok 16 - attr get hashref
ok 17 - del_attr
ok 18 - accessor
ok 19 - chained accessor
ok
t/pod...............1..8
ok 1 - POD for 'Atom.pm'
ok 2 - POD for 'Bond.pm'
ok 3 - POD for 'File.pm'
ok 4 - POD for 'Mol.pm'
ok 5 - POD for 'Obj.pm'
ok 6 - POD for 'Tutorial.pod'
ok 7 - POD for 'File/Dumper.pm'
ok 8 - POD for 'File/Formula.pm'
ok
t/safe_clone........1..9
ok 1 - atom(1) before clone
ok 2 - bond(1) before clone
ok 3 - mol->id before clone
ok 4 - atom(1) after clone
ok 5 - bond(1) after clone
ok 6 - mol->id after clone
ok 7 - atom(1) after safe_clone
ok 8 - bond(1) after safe_clone
ok 9 - mol->id after safe clone
ok
t/zlib..............1..6
ok 1 - explicit decompressed read isa Chemistry::Mol
ok 2 - has 8 atoms
ok 3 - implicit decompressed read isa Chemistry::Mol
ok 4 - has 8 atoms
ok 5 - compressed ok
ok 6 - implicit compression on output
ok
All tests successful.
Files=18, Tests=237,  7 wallclock secs ( 0.00 cusr +  0.00 csys =  0.00 CPU)

Microsoft (R) Program Maintenance Utility Version 7.10.3077
Copyright (C) Microsoft Corporation.  All rights reserved.

Installing C:\cpanrun\build\5-10-0\html\site\lib\Chemistry\Atom.html
Installing C:\cpanrun\build\5-10-0\html\site\lib\Chemistry\Bond.html
Installing C:\cpanrun\build\5-10-0\html\site\lib\Chemistry\File.html
Installing C:\cpanrun\build\5-10-0\html\site\lib\Chemistry\Mol.html
Installing C:\cpanrun\build\5-10-0\html\site\lib\Chemistry\Obj.html
Installing C:\cpanrun\build\5-10-0\html\site\lib\Chemistry\Tutorial.html
Installing C:\cpanrun\build\5-10-0\html\site\lib\Chemistry\File\Dumper.html
Installing C:\cpanrun\build\5-10-0\html\site\lib\Chemistry\File\Formula.html
Installing C:\cpanrun\build\5-10-0\site\lib\Chemistry\Atom.pm
Installing C:\cpanrun\build\5-10-0\site\lib\Chemistry\Bond.pm
Installing C:\cpanrun\build\5-10-0\site\lib\Chemistry\File.pm
Installing C:\cpanrun\build\5-10-0\site\lib\Chemistry\Mol.pm
Installing C:\cpanrun\build\5-10-0\site\lib\Chemistry\Obj.pm
Installing C:\cpanrun\build\5-10-0\site\lib\Chemistry\Tutorial.pod
Installing C:\cpanrun\build\5-10-0\site\lib\Chemistry\File\Dumper.pm
Installing C:\cpanrun\build\5-10-0\site\lib\Chemistry\File\Formula.pm
Appending installation info to C:\cpanrun\build\5-10-0\lib/perllocal.pod