Checking if your kit is complete...
Looks good
Note (probably harmless): No library found for -lm
Warning: prerequisite Bio::SeqIO::abi 0 not found.
Writing Makefile for Bio::Ext::Align
Please tell us where your Staden io_lib "read" library is installed:  [/usr/local/lib] /usr/local/lib
Please tell us where your Staden io_lib "Read.h" header is installed:  [\usr\local\include\io_lib] \usr\local\include\io_lib
Unrecognized switch: -read};'  (-h will show valid options).
Can't do inplace edit without backup.
Writing Makefile for Bio::SeqIO::staden::read
Writing Makefile for Bio

Microsoft (R) Program Maintenance Utility   Version 6.00.8168.0
Copyright (C) Microsoft Corp 1988-1998. All rights reserved.

Math::BigInt: couldn't load specified math lib(s), fallback to Math::BigInt::FastCalc at C:/cpanrun/build/5-10-0/site/lib/Win32API/File.pm line 20
cp Bio/Ext/Align/libs/hscore.h blib\lib\Bio\Ext\Align\libs\hscore.h
cp Bio/Ext/Align/libs/linesubs.h blib\lib\Bio\Ext\Align\libs\linesubs.h
cp Bio/Ext/Align/libs/probability.c blib\lib\Bio\Ext\Align\libs\probability.c
cp Bio/Ext/Align/test.pl blib\lib\Bio\Ext\Align\test.pl
cp Bio/Ext/Align/libs/wiseoverlay.h blib\lib\Bio\Ext\Align\libs\wiseoverlay.h
cp Bio/Ext/Align/libs/proteinsw.h blib\lib\Bio\Ext\Align\libs\proteinsw.h
cp Bio/Ext/Align/libs/wisebase.h blib\lib\Bio\Ext\Align\libs\wisebase.h
cp Bio/Ext/Align/libs/seqaligndisplay.h blib\lib\Bio\Ext\Align\libs\seqaligndisplay.h
cp Bio/Ext/Align/libs/dyna.h blib\lib\Bio\Ext\Align\libs\dyna.h
cp Bio/Ext/Align/libs/wiseerror.c blib\lib\Bio\Ext\Align\libs\wiseerror.c
cp Bio/Ext/Align/libs/commandline.h blib\lib\Bio\Ext\Align\libs\commandline.h
cp Bio/Ext/Align/libs/aln.c blib\lib\Bio\Ext\Align\libs\aln.c
cp Bio/Ext/Align/libs/packaln.c blib\lib\Bio\Ext\Align\libs\packaln.c
cp Bio/Ext/Align/libs/dpenvelope.c blib\lib\Bio\Ext\Align\libs\dpenvelope.c
cp Bio/Ext/Align/libs/complexsequence.c blib\lib\Bio\Ext\Align\libs\complexsequence.c
cp Bio/Ext/Align/libs/wisestring.h blib\lib\Bio\Ext\Align\libs\wisestring.h
cp Bio/Ext/Align/libs/codon.c blib\lib\Bio\Ext\Align\libs\codon.c
cp Bio/Ext/Align/libs/linspc.c blib\lib\Bio\Ext\Align\libs\linspc.c
cp Bio/Ext/Align/libs/probability.h blib\lib\Bio\Ext\Align\libs\probability.h
cp Bio/Ext/Align/Align.xs blib\lib\Bio\Ext\Align\Align.xs
Math::BigInt: couldn't load specified math lib(s), fallback to Math::BigInt::FastCalc at C:/cpanrun/build/5-10-0/site/lib/Win32API/File.pm line 20
cp Bio/Ext/Align/libs/packaln.h blib\lib\Bio\Ext\Align\libs\packaln.h
cp Bio/Ext/Align/libs/dynlibcross.c blib\lib\Bio\Ext\Align\libs\dynlibcross.c
cp Bio/Ext/Align/libs/sequencedb.c blib\lib\Bio\Ext\Align\libs\sequencedb.c
cp Bio/Ext/Align/libs/sw_wrap.c blib\lib\Bio\Ext\Align\libs\sw_wrap.c
cp Bio/Ext/Align/libs/wiseerror.h blib\lib\Bio\Ext\Align\libs\wiseerror.h
cp Bio/Ext/Align/Makefile.PL blib\lib\Bio\Ext\Align\Makefile.PL
cp Bio/Ext/Align/libs/complexsequence.h blib\lib\Bio\Ext\Align\libs\complexsequence.h
cp Bio/Ext/Align/libs/wiseconfig.h blib\lib\Bio\Ext\Align\libs\wiseconfig.h
cp Bio/Ext/Align/libs/dynlibcross.h blib\lib\Bio\Ext\Align\libs\dynlibcross.h
cp Bio/Ext/Align/libs/complexevalset.c blib\lib\Bio\Ext\Align\libs\complexevalset.c
cp Bio/Ext/Align/libs/complexevalset.h blib\lib\Bio\Ext\Align\libs\complexevalset.h
cp Bio/Ext/Align/libs/wisefile.c blib\lib\Bio\Ext\Align\libs\wisefile.c
cp Bio/Ext/Align/libs/wiseconfig.c blib\lib\Bio\Ext\Align\libs\wiseconfig.c
cp Bio/Ext/Align/libs/alnconvert.c blib\lib\Bio\Ext\Align\libs\alnconvert.c
cp Bio/Ext/Align/libs/histogram.h blib\lib\Bio\Ext\Align\libs\histogram.h
cp Bio/Ext/Align/libs/makefile blib\lib\Bio\Ext\Align\libs\makefile
cp Bio/Ext/Align/typemap blib\lib\Bio\Ext\Align\typemap
cp Bio/Ext/Align/libs/proteindb.h blib\lib\Bio\Ext\Align\libs\proteindb.h
cp Bio/Ext/Align/libs/btcanvas.c blib\lib\Bio\Ext\Align\libs\btcanvas.c
Math::BigInt: couldn't load specified math lib(s), fallback to Math::BigInt::FastCalc at C:/cpanrun/build/5-10-0/site/lib/Win32API/File.pm line 20
cp Bio/Ext/Align/libs/hscore.c blib\lib\Bio\Ext\Align\libs\hscore.c
cp Bio/Ext/Align/libs/complexconsensi.c blib\lib\Bio\Ext\Align\libs\complexconsensi.c
cp Bio/Ext/Align/libs/alnrange.c blib\lib\Bio\Ext\Align\libs\alnrange.c
cp Bio/Ext/Align/libs/dpenvelope.h blib\lib\Bio\Ext\Align\libs\dpenvelope.h
cp Bio/Ext/Align/libs/sequence.h blib\lib\Bio\Ext\Align\libs\sequence.h
cp Bio/Ext/Align/libs/asciibtcanvas.h blib\lib\Bio\Ext\Align\libs\asciibtcanvas.h
cp Bio/SeqIO/staden/read.pm blib\lib\Bio\SeqIO\staden\read.pm
cp Bio/Ext/Align/blosum62.bla blib\lib\Bio\Ext\Align\blosum62.bla
cp Bio/Ext/Align/libs/protein.h blib\lib\Bio\Ext\Align\libs\protein.h
cp Bio/Ext/Align/libs/sequencedb.h blib\lib\Bio\Ext\Align\libs\sequencedb.h
cp Bio/Ext/Align/Align.pm blib\lib\Bio\Ext\Align\Align.pm
cp Bio/Ext/Makefile.PL blib\lib\Bio\Ext\Makefile.PL
cp Bio/Ext/Align/libs/complexconsensi.h blib\lib\Bio\Ext\Align\libs\complexconsensi.h
cp Bio/Ext/Align/libs/dna.c blib\lib\Bio\Ext\Align\libs\dna.c
cp Bio/Ext/Align/libs/sw.h blib\lib\Bio\Ext\Align\libs\sw.h
cp Bio/SeqIO/staden/test.pl blib\lib\Bio\SeqIO\staden\test.pl
cp Bio/SeqIO/staden/Makefile.PL blib\lib\Bio\SeqIO\staden\Makefile.PL
cp Bio/Ext/Align/libs/wisestring.c blib\lib\Bio\Ext\Align\libs\wisestring.c
cp Bio/Ext/Align/libs/alnrange.h blib\lib\Bio\Ext\Align\libs\alnrange.h
cp Bio/Ext/Align/libs/sw_wrap.h blib\lib\Bio\Ext\Align\libs\sw_wrap.h
Math::BigInt: couldn't load specified math lib(s), fallback to Math::BigInt::FastCalc at C:/cpanrun/build/5-10-0/site/lib/Win32API/File.pm line 20
cp Bio/Ext/Align/libs/wiserandom.c blib\lib\Bio\Ext\Align\libs\wiserandom.c
cp Bio/Ext/Align/libs/btcanvas.h blib\lib\Bio\Ext\Align\libs\btcanvas.h
cp Bio/Ext/Align/libs/proteindb.c blib\lib\Bio\Ext\Align\libs\proteindb.c
cp Bio/Ext/Align/libs/linesubs.c blib\lib\Bio\Ext\Align\libs\linesubs.c
cp Bio/Ext/Align/libs/codon.h blib\lib\Bio\Ext\Align\libs\codon.h
cp Bio/Ext/Align/libs/compmat.c blib\lib\Bio\Ext\Align\libs\compmat.c
cp Bio/Ext/Align/libs/basematrix.h blib\lib\Bio\Ext\Align\libs\basematrix.h
cp Bio/Ext/Align/libs/histogram.c blib\lib\Bio\Ext\Align\libs\histogram.c
cp Bio/Ext/Align/libs/dnamatrix.h blib\lib\Bio\Ext\Align\libs\dnamatrix.h
cp Bio/Ext/Align/libs/wiserandom.h blib\lib\Bio\Ext\Align\libs\wiserandom.h
cp Bio/Ext/Align/libs/wisememman.c blib\lib\Bio\Ext\Align\libs\wisememman.c
cp Bio/Ext/Align/libs/seqaligndisplay.c blib\lib\Bio\Ext\Align\libs\seqaligndisplay.c
cp Bio/Ext/Align/libs/commandline.c blib\lib\Bio\Ext\Align\libs\commandline.c
cp Bio/Ext/Align/libs/alnconvert.h blib\lib\Bio\Ext\Align\libs\alnconvert.h
cp Bio/Ext/Align/libs/dpalign.c blib\lib\Bio\Ext\Align\libs\dpalign.c
cp Bio/Ext/Align/libs/database.h blib\lib\Bio\Ext\Align\libs\database.h
cp Bio/Ext/Align/libs/proteinsw.c blib\lib\Bio\Ext\Align\libs\proteinsw.c
cp Bio/Ext/Align/libs/dpalign.h blib\lib\Bio\Ext\Align\libs\dpalign.h
cp Bio/Ext/Align/libs/wisetime.c blib\lib\Bio\Ext\Align\libs\wisetime.c
Math::BigInt: couldn't load specified math lib(s), fallback to Math::BigInt::FastCalc at C:/cpanrun/build/5-10-0/site/lib/Win32API/File.pm line 20
cp Bio/Ext/Align/libs/dna.h blib\lib\Bio\Ext\Align\libs\dna.h
cp Bio/Ext/Align/libs/basematrix.c blib\lib\Bio\Ext\Align\libs\basematrix.c
cp Bio/Ext/Align/libs/aln.h blib\lib\Bio\Ext\Align\libs\aln.h
cp Bio/Ext/Align/libs/sequence.c blib\lib\Bio\Ext\Align\libs\sequence.c
cp Bio/Ext/Align/libs/wisememman.h blib\lib\Bio\Ext\Align\libs\wisememman.h
cp Bio/Ext/Align/libs/wisetime.h blib\lib\Bio\Ext\Align\libs\wisetime.h
cp Bio/Ext/Align/libs/protein.c blib\lib\Bio\Ext\Align\libs\protein.c
cp Bio/Ext/Align/libs/wiseoverlay.c blib\lib\Bio\Ext\Align\libs\wiseoverlay.c
cp Bio/Ext/Align/libs/compmat.h blib\lib\Bio\Ext\Align\libs\compmat.h
cp Bio/Ext/Align/libs/dnamatrix.c blib\lib\Bio\Ext\Align\libs\dnamatrix.c
cp Bio/Ext/Align/libs/asciibtcanvas.c blib\lib\Bio\Ext\Align\libs\asciibtcanvas.c
cp Bio/Ext/Align/libs/wisefile.h blib\lib\Bio\Ext\Align\libs\wisefile.h
	nmake -f Makefile all -nologo
Math::BigInt: couldn't load specified math lib(s), fallback to Math::BigInt::FastCalc at C:/cpanrun/build/5-10-0/site/lib/Win32API/File.pm line 20
cp Align.pm ..\blib\lib\Bio\Ext\Align.pm
	DEFINE='-DPOSIX -DNOERROR'; CC='cl'; export DEFINE INC CC;  cd libs && nmake CC=cl libsw.lib -e
'DEFINE' is not recognized as an internal or external command,
operable program or batch file.
NMAKE : fatal error U1077: 'DEFINE='-DPOSIX' : return code '0x1'
Stop.
NMAKE : fatal error U1077: 'C:\PROGRA~1\MICROS~3\VC98\BIN\nmake.exe' : return code '0x2'
Stop.