XML::XPath is missing. This module is only required in order to perform parsing operations with IntAct-XML files. However, this module is not required for using onto-perl. If you do not intend to use IntAct XML files, then you may continue, and install XML::XPath in the future. SWISS::Entry is missing. This module is only required in order to perform parsing operations with UniProt files. However, this module is not required for using onto-perl. If you do not intend to use UniProt files, then you may continue, and install SWISS::Entry in the future. Checking if your kit is complete... Looks good Writing Makefile for CCO Microsoft (R) Program Maintenance Utility Version 7.10.3077 Copyright (C) Microsoft Corporation. All rights reserved. cp CCO/Core/GoaAssociation.pm blib\lib\CCO\Core\GoaAssociation.pm cp CCO/Util/DbxrefSet.pm blib\lib\CCO\Util\DbxrefSet.pm cp CCO/Parser/UniProtParser.pm blib\lib\CCO\Parser\UniProtParser.pm cp CCO/Util/TermSet.pm blib\lib\CCO\Util\TermSet.pm cp CCO/Util/GoaAssociationSet.pm blib\lib\CCO\Util\GoaAssociationSet.pm cp CCO/Core/SynonymTypeDef.pm blib\lib\CCO\Core\SynonymTypeDef.pm cp CCO/Util/CCO_ID_Set.pm blib\lib\CCO\Util\CCO_ID_Set.pm cp CCO/Parser/InteractionManager.pm blib\lib\CCO\Parser\InteractionManager.pm cp CCO/Core/Synonym.pm blib\lib\CCO\Core\Synonym.pm cp CCO/Core/Def.pm blib\lib\CCO\Core\Def.pm cp CCO/Util/ObjectIdSet.pm blib\lib\CCO\Util\ObjectIdSet.pm cp CCO/Util/CCO_ID_Term_Map.pm blib\lib\CCO\Util\CCO_ID_Term_Map.pm cp CCO/Core/Term.pm blib\lib\CCO\Core\Term.pm cp CCO/Parser/NCBIParser.pm blib\lib\CCO\Parser\NCBIParser.pm cp CCO/Util/SynonymTypeDefSet.pm blib\lib\CCO\Util\SynonymTypeDefSet.pm cp CCO/Parser/OrthoMCLParser.pm blib\lib\CCO\Parser\OrthoMCLParser.pm cp onto-perl.pod blib\lib\onto-perl.pod cp CCO/Util/CCO_ID.pm blib\lib\CCO\Util\CCO_ID.pm cp CCO/Core/Interaction.pm blib\lib\CCO\Core\Interaction.pm cp CCO/Util/Ontolome.pm blib\lib\CCO\Util\Ontolome.pm cp CCO/Util/SynonymSet.pm blib\lib\CCO\Util\SynonymSet.pm cp CCO/Util/Set.pm blib\lib\CCO\Util\Set.pm cp CCO/Util/XMLIntactParser.pm blib\lib\CCO\Util\XMLIntactParser.pm cp CCO/Parser/OBOParser.pm blib\lib\CCO\Parser\OBOParser.pm cp CCO/Parser/OWLParser.pm blib\lib\CCO\Parser\OWLParser.pm cp CCO/Core/Dbxref.pm blib\lib\CCO\Core\Dbxref.pm cp CCO/Core/IDspace.pm blib\lib\CCO\Core\IDspace.pm cp CCO/Parser/IntActParser.pm blib\lib\CCO\Parser\IntActParser.pm cp CCO/Core/Relationship.pm blib\lib\CCO\Core\Relationship.pm cp CCO/Core/RelationshipType.pm blib\lib\CCO\Core\RelationshipType.pm cp CCO/Util/ObjectSet.pm blib\lib\CCO\Util\ObjectSet.pm cp CCO/Core/Ontology.pm blib\lib\CCO\Core\Ontology.pm cp CCO/Parser/GoaParser.pm blib\lib\CCO\Parser\GoaParser.pm cp CCO/Parser/NewIntActParser.pm blib\lib\CCO\Parser\NewIntActParser.pm cp CCO/Core/Interactor.pm blib\lib\CCO\Core\Interactor.pm C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/term_id_vs_term_name.pl blib\script\term_id_vs_term_name.pl pl2bat.bat blib\script\term_id_vs_term_name.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obsolete_term_id_vs_name_in_go.pl blib\script\obsolete_term_id_vs_name_in_go.pl pl2bat.bat blib\script\obsolete_term_id_vs_name_in_go.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/owl2obo.pl blib\script\owl2obo.pl pl2bat.bat blib\script\owl2obo.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/go2owl.pl blib\script\go2owl.pl pl2bat.bat blib\script\go2owl.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2xml.pl blib\script\obo2xml.pl pl2bat.bat blib\script\obo2xml.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obsolete_term_id_vs_def_in_go.pl blib\script\obsolete_term_id_vs_def_in_go.pl pl2bat.bat blib\script\obsolete_term_id_vs_def_in_go.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2owl.pl blib\script\obo2owl.pl pl2bat.bat blib\script\obo2owl.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/term_id_vs_term_def.pl blib\script\term_id_vs_term_def.pl pl2bat.bat blib\script\term_id_vs_term_def.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2cco.pl blib\script\obo2cco.pl pl2bat.bat blib\script\obo2cco.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/get_ancestor_terms.pl blib\script\get_ancestor_terms.pl pl2bat.bat blib\script\get_ancestor_terms.pl Microsoft (R) Program Maintenance Utility Version 7.10.3077 Copyright (C) Microsoft Corporation. All rights reserved. C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/term_id_vs_term_name.pl blib\script\term_id_vs_term_name.pl pl2bat.bat blib\script\term_id_vs_term_name.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obsolete_term_id_vs_name_in_go.pl blib\script\obsolete_term_id_vs_name_in_go.pl pl2bat.bat blib\script\obsolete_term_id_vs_name_in_go.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/owl2obo.pl blib\script\owl2obo.pl pl2bat.bat blib\script\owl2obo.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/go2owl.pl blib\script\go2owl.pl pl2bat.bat blib\script\go2owl.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2xml.pl blib\script\obo2xml.pl pl2bat.bat blib\script\obo2xml.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obsolete_term_id_vs_def_in_go.pl blib\script\obsolete_term_id_vs_def_in_go.pl pl2bat.bat blib\script\obsolete_term_id_vs_def_in_go.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2owl.pl blib\script\obo2owl.pl pl2bat.bat blib\script\obo2owl.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/term_id_vs_term_def.pl blib\script\term_id_vs_term_def.pl pl2bat.bat blib\script\term_id_vs_term_def.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2cco.pl blib\script\obo2cco.pl pl2bat.bat blib\script\obo2cco.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/get_ancestor_terms.pl blib\script\get_ancestor_terms.pl pl2bat.bat blib\script\get_ancestor_terms.pl C:\cpanrun\build\5-10-0\bin\perl.exe "-MExtUtils::Command::MM" "-e" "test_harness(1, 'blib\lib', 'blib\arch')" t/*.t t/CCO_ID...............1..5 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok t/CCO_ID_Set...........1..20 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok t/CCO_ID_Term_Map......1..19 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok t/Dbxref...............1..18 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok t/DbxrefSet............1..23 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok t/Def..................1..14 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok t/GoaAssociation.......1..11 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok t/GoaAssociationSet....1..32 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok t/GoaParser............1..6 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:07 2008 # Current time GMT: Wed Jan 2 21:42:07 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/IDspace..............1..16 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:08 2008 # Current time GMT: Wed Jan 2 21:42:08 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok t/IntActParser.........1..7 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok t/NCBIParser...........1..3 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:12 2008 # Current time GMT: Wed Jan 2 21:42:12 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok t/NewIntActParser......1..8 ok 1 ok 2 # skip because XML::XPath is required for testing the new IntAct parser ok 3 # skip because XML::XPath is required for testing the new IntAct parser ok 4 # skip because XML::XPath is required for testing the new IntAct parser ok 5 # skip because XML::XPath is required for testing the new IntAct parser ok 6 # skip because XML::XPath is required for testing the new IntAct parser ok 7 # skip because XML::XPath is required for testing the new IntAct parser ok 8 # skip because XML::XPath is required for testing the new IntAct parser ok 7/8 skipped: various reasons t/OBOParser............1..19 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:14 2008 # Current time GMT: Wed Jan 2 21:42:14 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok t/Ontology.............1..180 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:21 2008 # Current time GMT: Wed Jan 2 21:42:21 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok 67 ok 68 ok 69 ok 70 ok 71 ok 72 ok 73 ok 74 ok 75 ok 76 ok 77 ok 78 ok 79 ok 80 ok 81 ok 82 ok 83 ok 84 ok 85 ok 86 ok 87 ok 88 ok 89 ok 90 ok 91 ok 92 ok 93 ok 94 ok 95 ok 96 ok 97 ok 98 ok 99 ok 100 ok 101 ok 102 ok 103 ok 104 ok 105 ok 106 ok 107 ok 108 ok 109 ok 110 ok 111 ok 112 ok 113 ok 114 ok 115 ok 116 ok 117 ok 118 ok 119 ok 120 ok 121 ok 122 ok 123 ok 124 ok 125 ok 126 ok 127 ok 128 ok 129 ok 130 ok 131 ok 132 ok 133 ok 134 ok 135 ok 136 ok 137 ok 138 ok 139 ok 140 ok 141 ok 142 ok 143 ok 144 ok 145 ok 146 ok 147 ok 148 ok 149 ok 150 ok 151 ok 152 ok 153 ok 154 ok 155 ok 156 ok 157 ok 158 ok 159 ok 160 ok 161 ok 162 ok 163 ok 164 ok 165 ok 166 ok 167 ok 168 ok 169 ok 170 ok 171 ok 172 ok 173 ok 174 ok 175 ok 176 ok 177 ok 178 ok 179 ok 180 ok t/Ontolome.............1..58 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:21 2008 # Current time GMT: Wed Jan 2 21:42:21 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok t/OrthoMCLParser.......1..17 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:22 2008 # Current time GMT: Wed Jan 2 21:42:22 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok t/OWLParser............1..6 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok t/Relationship.........1..10 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:22 2008 # Current time GMT: Wed Jan 2 21:42:22 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok t/RelationshipType.....1..39 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:22 2008 # Current time GMT: Wed Jan 2 21:42:22 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok t/Set..................1..15 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:22 2008 # Current time GMT: Wed Jan 2 21:42:22 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok t/Synonym..............1..34 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:22 2008 # Current time GMT: Wed Jan 2 21:42:22 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok t/SynonymSet...........1..33 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:22 2008 # Current time GMT: Wed Jan 2 21:42:22 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok t/SynonymTypeDef.......1..8 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:23 2008 # Current time GMT: Wed Jan 2 21:42:23 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok t/SynonymTypeDefSet....1..30 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:23 2008 # Current time GMT: Wed Jan 2 21:42:23 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok t/Term.................1..66 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:23 2008 # Current time GMT: Wed Jan 2 21:42:23 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 ok 49 ok 50 ok 51 ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 ok t/TermSet..............1..33 # Running under perl version 5.010000 for MSWin32 # Win32::BuildNumber 1001 # Current time local: Wed Jan 2 13:42:23 2008 # Current time GMT: Wed Jan 2 21:42:23 2008 # Using Test.pm version 1.25 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok t/UniProtParser........1..12 ok 1 # skip because SWISS::Entry is required for testing the UniProt parser ok 2 # skip because SWISS::Entry is required for testing the UniProt parser ok 3 # skip because SWISS::Entry is required for testing the UniProt parser ok 4 # skip because SWISS::Entry is required for testing the UniProt parser ok 5 # skip because SWISS::Entry is required for testing the UniProt parser ok 6 # skip because SWISS::Entry is required for testing the UniProt parser ok 7 # skip because SWISS::Entry is required for testing the UniProt parser ok 8 # skip because SWISS::Entry is required for testing the UniProt parser ok 9 # skip because SWISS::Entry is required for testing the UniProt parser ok 10 # skip because SWISS::Entry is required for testing the UniProt parser ok 11 # skip because SWISS::Entry is required for testing the UniProt parser ok 12 # skip because SWISS::Entry is required for testing the UniProt parser ok 12/12 skipped: various reasons All tests successful, 19 subtests skipped. Files=28, Tests=742, 16 wallclock secs ( 0.00 cusr + 0.00 csys = 0.00 CPU) Microsoft (R) Program Maintenance Utility Version 7.10.3077 Copyright (C) Microsoft Corporation. All rights reserved. C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/term_id_vs_term_name.pl blib\script\term_id_vs_term_name.pl pl2bat.bat blib\script\term_id_vs_term_name.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obsolete_term_id_vs_name_in_go.pl blib\script\obsolete_term_id_vs_name_in_go.pl pl2bat.bat blib\script\obsolete_term_id_vs_name_in_go.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/owl2obo.pl blib\script\owl2obo.pl pl2bat.bat blib\script\owl2obo.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/go2owl.pl blib\script\go2owl.pl pl2bat.bat blib\script\go2owl.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2xml.pl blib\script\obo2xml.pl pl2bat.bat blib\script\obo2xml.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obsolete_term_id_vs_def_in_go.pl blib\script\obsolete_term_id_vs_def_in_go.pl pl2bat.bat blib\script\obsolete_term_id_vs_def_in_go.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2owl.pl blib\script\obo2owl.pl pl2bat.bat blib\script\obo2owl.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/term_id_vs_term_def.pl blib\script\term_id_vs_term_def.pl pl2bat.bat blib\script\term_id_vs_term_def.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/obo2cco.pl blib\script\obo2cco.pl pl2bat.bat blib\script\obo2cco.pl C:\cpanrun\build\5-10-0\bin\perl.exe -MExtUtils::Command -e cp scripts/get_ancestor_terms.pl blib\script\get_ancestor_terms.pl pl2bat.bat blib\script\get_ancestor_terms.pl Installing C:\cpanrun\build\5-10-0\html\bin\get_ancestor_terms.html Installing C:\cpanrun\build\5-10-0\html\bin\go2owl.html Installing C:\cpanrun\build\5-10-0\html\bin\obo2owl.html Installing C:\cpanrun\build\5-10-0\html\bin\obsolete_term_id_vs_def_in_go.html Installing C:\cpanrun\build\5-10-0\html\bin\obsolete_term_id_vs_name_in_go.html Installing C:\cpanrun\build\5-10-0\html\bin\owl2obo.html Installing C:\cpanrun\build\5-10-0\html\site\lib\onto-perl.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\Dbxref.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\Def.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\GoaAssociation.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\IDspace.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\Interaction.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\Interactor.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\Ontology.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\Relationship.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\RelationshipType.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\Synonym.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\SynonymTypeDef.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Core\Term.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\GoaParser.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\IntActParser.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\InteractionManager.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\NCBIParser.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\NewIntActParser.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\OBOParser.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\OrthoMCLParser.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\OWLParser.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Parser\UniProtParser.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\CCO_ID.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\CCO_ID_Set.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\CCO_ID_Term_Map.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\DbxrefSet.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\GoaAssociationSet.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\ObjectIdSet.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\ObjectSet.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\Ontolome.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\Set.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\SynonymSet.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\SynonymTypeDefSet.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\TermSet.html Installing C:\cpanrun\build\5-10-0\html\site\lib\CCO\Util\XMLIntactParser.html Installing C:\cpanrun\build\5-10-0\site\lib\onto-perl.pod Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\Dbxref.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\Def.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\GoaAssociation.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\IDspace.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\Interaction.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\Interactor.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\Ontology.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\Relationship.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\RelationshipType.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\Synonym.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\SynonymTypeDef.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Core\Term.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\GoaParser.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\IntActParser.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\InteractionManager.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\NCBIParser.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\NewIntActParser.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\OBOParser.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\OrthoMCLParser.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\OWLParser.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Parser\UniProtParser.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\CCO_ID.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\CCO_ID_Set.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\CCO_ID_Term_Map.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\DbxrefSet.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\GoaAssociationSet.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\ObjectIdSet.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\ObjectSet.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\Ontolome.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\Set.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\SynonymSet.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\SynonymTypeDefSet.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\TermSet.pm Installing C:\cpanrun\build\5-10-0\site\lib\CCO\Util\XMLIntactParser.pm Installing C:\cpanrun\build\5-10-0\site\bin\get_ancestor_terms.bat Installing C:\cpanrun\build\5-10-0\site\bin\get_ancestor_terms.pl Installing C:\cpanrun\build\5-10-0\site\bin\go2owl.bat Installing C:\cpanrun\build\5-10-0\site\bin\go2owl.pl Installing C:\cpanrun\build\5-10-0\site\bin\obo2cco.bat Installing C:\cpanrun\build\5-10-0\site\bin\obo2cco.pl Installing C:\cpanrun\build\5-10-0\site\bin\obo2owl.bat Installing C:\cpanrun\build\5-10-0\site\bin\obo2owl.pl Installing C:\cpanrun\build\5-10-0\site\bin\obo2xml.bat Installing C:\cpanrun\build\5-10-0\site\bin\obo2xml.pl Installing C:\cpanrun\build\5-10-0\site\bin\obsolete_term_id_vs_def_in_go.bat Installing C:\cpanrun\build\5-10-0\site\bin\obsolete_term_id_vs_def_in_go.pl Installing C:\cpanrun\build\5-10-0\site\bin\obsolete_term_id_vs_name_in_go.bat Installing C:\cpanrun\build\5-10-0\site\bin\obsolete_term_id_vs_name_in_go.pl Installing C:\cpanrun\build\5-10-0\site\bin\owl2obo.bat Installing C:\cpanrun\build\5-10-0\site\bin\owl2obo.pl Installing C:\cpanrun\build\5-10-0\site\bin\term_id_vs_term_def.bat Installing C:\cpanrun\build\5-10-0\site\bin\term_id_vs_term_def.pl Installing C:\cpanrun\build\5-10-0\site\bin\term_id_vs_term_name.bat Installing C:\cpanrun\build\5-10-0\site\bin\term_id_vs_term_name.pl Appending installation info to C:\cpanrun\build\5-10-0\lib/perllocal.pod