Checking if your kit is complete...
Looks good
Writing Makefile for Bio::Tools::LatticeProtein
cp LatticeProtein/Vars.pm blib/lib/Bio/Tools/LatticeProtein/Vars.pm
cp LatticeProtein.pm blib/lib/Bio/Tools/LatticeProtein.pm
Manifying blib/man3/Bio::Tools::LatticeProtein.3
make: getcwd: : No such file or directory
make: *** No rule to make target `test'.  Stop.