Generated sub tests. go make show_tests to see available subtests

Checking if your kit is complete...
Looks good
Writing Makefile for Bio
cp Bio/Tools/Run/PiseApplication/boxshade.pm blib/lib/Bio/Tools/Run/PiseApplication/boxshade.pm
cp Bio/Tools/Run/PiseApplication/dnapars.pm blib/lib/Bio/Tools/Run/PiseApplication/dnapars.pm
cp Bio/Tools/Run/PiseApplication/prettyalign.pm blib/lib/Bio/Tools/Run/PiseApplication/prettyalign.pm
cp Bio/Tools/Run/PiseApplication/drawtree.pm blib/lib/Bio/Tools/Run/PiseApplication/drawtree.pm
cp Bio/Tools/Run/Pseudowise.pm blib/lib/Bio/Tools/Run/Pseudowise.pm
cp Bio/Tools/Run/PiseApplication/newseq.pm blib/lib/Bio/Tools/Run/PiseApplication/newseq.pm
cp Bio/Tools/Run/PiseApplication/weighbor.pm blib/lib/Bio/Tools/Run/PiseApplication/weighbor.pm
cp Bio/Tools/Run/PiseApplication/tranalign.pm blib/lib/Bio/Tools/Run/PiseApplication/tranalign.pm
cp Bio/Tools/Run/PiseApplication/sreformat.pm blib/lib/Bio/Tools/Run/PiseApplication/sreformat.pm
cp Bio/Tools/Run/PiseApplication/fmtseq.pm blib/lib/Bio/Tools/Run/PiseApplication/fmtseq.pm
cp Bio/Tools/Run/PiseApplication/most.pm blib/lib/Bio/Tools/Run/PiseApplication/most.pm
cp Bio/Tools/Run/PiseApplication/prophecy.pm blib/lib/Bio/Tools/Run/PiseApplication/prophecy.pm
cp Bio/Tools/Run/PiseApplication/extractseq.pm blib/lib/Bio/Tools/Run/PiseApplication/extractseq.pm
cp Bio/Tools/Run/PiseApplication/clustalw.pm blib/lib/Bio/Tools/Run/PiseApplication/clustalw.pm
cp Bio/Tools/Run/PiseApplication/codcmp.pm blib/lib/Bio/Tools/Run/PiseApplication/codcmp.pm
cp Bio/Tools/Run/PiseApplication/findkm.pm blib/lib/Bio/Tools/Run/PiseApplication/findkm.pm
cp Bio/Tools/Run/PiseApplication/dotmatcher.pm blib/lib/Bio/Tools/Run/PiseApplication/dotmatcher.pm
cp Bio/Tools/Run/PiseApplication/chaos.pm blib/lib/Bio/Tools/Run/PiseApplication/chaos.pm
cp Bio/Tools/Run/PiseApplication/codnocod.pm blib/lib/Bio/Tools/Run/PiseApplication/codnocod.pm
cp Bio/Tools/Run/PiseApplication/isochore.pm blib/lib/Bio/Tools/Run/PiseApplication/isochore.pm
cp Bio/Tools/Run/PiseApplication/makehist.pm blib/lib/Bio/Tools/Run/PiseApplication/makehist.pm
cp Bio/Tools/Run/PiseApplication/predator.pm blib/lib/Bio/Tools/Run/PiseApplication/predator.pm
cp Bio/Tools/Run/PiseApplication/primo.pm blib/lib/Bio/Tools/Run/PiseApplication/primo.pm
cp Bio/Tools/Run/PiseApplication/fuzznuc.pm blib/lib/Bio/Tools/Run/PiseApplication/fuzznuc.pm
cp Bio/Tools/Run/Alignment/Sim4.pm blib/lib/Bio/Tools/Run/Alignment/Sim4.pm
cp Bio/Tools/Run/PiseApplication/shuffleseq.pm blib/lib/Bio/Tools/Run/PiseApplication/shuffleseq.pm
cp Bio/Tools/Run/PiseApplication/dreg.pm blib/lib/Bio/Tools/Run/PiseApplication/dreg.pm
cp Bio/Tools/Run/PiseApplication/loadseq.pm blib/lib/Bio/Tools/Run/PiseApplication/loadseq.pm
cp Bio/Tools/Run/AnalysisFactory.pm blib/lib/Bio/Tools/Run/AnalysisFactory.pm
cp Bio/Tools/Run/PiseApplication/etandem.pm blib/lib/Bio/Tools/Run/PiseApplication/etandem.pm
cp Bio/Tools/Run/PiseApplication/supermatcher.pm blib/lib/Bio/Tools/Run/PiseApplication/supermatcher.pm
cp Bio/Tools/Run/Primer3.pm blib/lib/Bio/Tools/Run/Primer3.pm
cp Bio/Tools/Run/PiseApplication/btwisted.pm blib/lib/Bio/Tools/Run/PiseApplication/btwisted.pm
cp Bio/Tools/Run/Vista.pm blib/lib/Bio/Tools/Run/Vista.pm
cp Bio/Tools/Run/PiseApplication/confmat.pm blib/lib/Bio/Tools/Run/PiseApplication/confmat.pm
cp Bio/Tools/Run/PiseApplication/merger.pm blib/lib/Bio/Tools/Run/PiseApplication/merger.pm
cp Bio/Tools/Run/PiseApplication/eprimer3.pm blib/lib/Bio/Tools/Run/PiseApplication/eprimer3.pm
cp Bio/Tools/Run/PiseApplication/psort2.pm blib/lib/Bio/Tools/Run/PiseApplication/psort2.pm
cp Bio/Tools/Run/PiseApplication/cap.pm blib/lib/Bio/Tools/Run/PiseApplication/cap.pm
cp Bio/Tools/Run/PiseApplication/fastdnaml.pm blib/lib/Bio/Tools/Run/PiseApplication/fastdnaml.pm
cp Bio/Tools/Run/Alignment/DBA.pm blib/lib/Bio/Tools/Run/Alignment/DBA.pm
cp Bio/Tools/Run/PiseApplication/rnafold.pm blib/lib/Bio/Tools/Run/PiseApplication/rnafold.pm
cp Bio/Tools/Run/PiseApplication/qstar.pm blib/lib/Bio/Tools/Run/PiseApplication/qstar.pm
cp Bio/Tools/Run/PiseApplication/protal2dna.pm blib/lib/Bio/Tools/Run/PiseApplication/protal2dna.pm
cp Bio/Tools/Run/Mdust.pm blib/lib/Bio/Tools/Run/Mdust.pm
cp Bio/Tools/Run/PiseApplication/protpars.pm blib/lib/Bio/Tools/Run/PiseApplication/protpars.pm
cp Bio/Tools/Run/PiseApplication/pepwheel.pm blib/lib/Bio/Tools/Run/PiseApplication/pepwheel.pm
cp Bio/Tools/Run/PiseApplication/phiblast.pm blib/lib/Bio/Tools/Run/PiseApplication/phiblast.pm
cp Bio/Tools/Run/PiseApplication/gibbs.pm blib/lib/Bio/Tools/Run/PiseApplication/gibbs.pm
cp Bio/Tools/Run/PiseApplication/getblock.pm blib/lib/Bio/Tools/Run/PiseApplication/getblock.pm
cp Bio/Tools/Run/PiseApplication/xpound.pm blib/lib/Bio/Tools/Run/PiseApplication/xpound.pm
cp Bio/Tools/Run/PiseWorkflow.pm blib/lib/Bio/Tools/Run/PiseWorkflow.pm
cp Bio/Tools/Run/Alignment/StandAloneFasta.pm blib/lib/Bio/Tools/Run/Alignment/StandAloneFasta.pm
cp Bio/Tools/Run/PiseApplication/cds.pm blib/lib/Bio/Tools/Run/PiseApplication/cds.pm
cp Bio/Tools/Run/PiseApplication/mwfilter.pm blib/lib/Bio/Tools/Run/PiseApplication/mwfilter.pm
cp Bio/Tools/Run/PiseApplication/degapseq.pm blib/lib/Bio/Tools/Run/PiseApplication/degapseq.pm
cp Bio/Tools/Run/AnalysisFactory/soap.pm blib/lib/Bio/Tools/Run/AnalysisFactory/soap.pm
cp Bio/Tools/Run/PiseApplication/njdist.pm blib/lib/Bio/Tools/Run/PiseApplication/njdist.pm
cp Bio/Tools/Run/PiseApplication/showorf.pm blib/lib/Bio/Tools/Run/PiseApplication/showorf.pm
cp Bio/Tools/Run/PiseApplication/lassap.pm blib/lib/Bio/Tools/Run/PiseApplication/lassap.pm
cp Bio/Tools/Run/PiseApplication/redata.pm blib/lib/Bio/Tools/Run/PiseApplication/redata.pm
cp Bio/Tools/Run/PiseApplication/marscan.pm blib/lib/Bio/Tools/Run/PiseApplication/marscan.pm
cp Bio/Tools/Run/PiseApplication/wordcount.pm blib/lib/Bio/Tools/Run/PiseApplication/wordcount.pm
cp Bio/Tools/Run/PiseApplication/descseq.pm blib/lib/Bio/Tools/Run/PiseApplication/descseq.pm
cp Bio/Tools/Run/PiseApplication.pm blib/lib/Bio/Tools/Run/PiseApplication.pm
cp Bio/Tools/Run/PiseJob.pm blib/lib/Bio/Tools/Run/PiseJob.pm
cp Bio/Tools/Run/PiseApplication/cons.pm blib/lib/Bio/Tools/Run/PiseApplication/cons.pm
cp Bio/Tools/Run/PiseApplication/tfscan.pm blib/lib/Bio/Tools/Run/PiseApplication/tfscan.pm
cp Bio/Tools/Run/PiseApplication/toppred.pm blib/lib/Bio/Tools/Run/PiseApplication/toppred.pm
cp Bio/Tools/Run/PiseApplication/emowse.pm blib/lib/Bio/Tools/Run/PiseApplication/emowse.pm
cp Bio/Tools/Run/PiseApplication/genscan.pm blib/lib/Bio/Tools/Run/PiseApplication/genscan.pm
cp Bio/Tools/Run/PiseApplication/cpgplot.pm blib/lib/Bio/Tools/Run/PiseApplication/cpgplot.pm
cp Bio/Tools/Run/PiseApplication/vectorstrip.pm blib/lib/Bio/Tools/Run/PiseApplication/vectorstrip.pm
cp Bio/Tools/Run/PiseApplication/pima.pm blib/lib/Bio/Tools/Run/PiseApplication/pima.pm
cp Bio/Tools/Run/PiseApplication/maskseq.pm blib/lib/Bio/Tools/Run/PiseApplication/maskseq.pm
cp Bio/Tools/Run/PiseApplication/plsearch.pm blib/lib/Bio/Tools/Run/PiseApplication/plsearch.pm
cp Bio/Tools/Run/PiseApplication/helixturnhelix.pm blib/lib/Bio/Tools/Run/PiseApplication/helixturnhelix.pm
cp Bio/Tools/Run/PiseApplication/scope.pm blib/lib/Bio/Tools/Run/PiseApplication/scope.pm
cp Bio/Tools/Run/PiseApplication/sirna.pm blib/lib/Bio/Tools/Run/PiseApplication/sirna.pm
cp Bio/Tools/Run/PiseApplication/profit.pm blib/lib/Bio/Tools/Run/PiseApplication/profit.pm
cp Bio/Tools/Run/PiseApplication/dialign2.pm blib/lib/Bio/Tools/Run/PiseApplication/dialign2.pm
cp Bio/Tools/Run/PiseApplication/gb2xml.pm blib/lib/Bio/Tools/Run/PiseApplication/gb2xml.pm
cp Bio/Tools/Run/PiseApplication/abiview.pm blib/lib/Bio/Tools/Run/PiseApplication/abiview.pm
cp Bio/Tools/Run/Alignment/Blat.pm blib/lib/Bio/Tools/Run/Alignment/Blat.pm
cp Bio/Tools/Run/PiseApplication/pepwindowall.pm blib/lib/Bio/Tools/Run/PiseApplication/pepwindowall.pm
cp Bio/Tools/Run/PiseApplication/melting.pm blib/lib/Bio/Tools/Run/PiseApplication/melting.pm
cp Bio/Tools/Run/Phylo/Phylip/ProtDist.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtDist.pm
cp Bio/Tools/Run/PiseApplication/codontree.pm blib/lib/Bio/Tools/Run/PiseApplication/codontree.pm
cp Bio/Tools/Run/PiseApplication/restover.pm blib/lib/Bio/Tools/Run/PiseApplication/restover.pm
cp Bio/Tools/Run/PiseApplication/biosed.pm blib/lib/Bio/Tools/Run/PiseApplication/biosed.pm
cp Bio/Tools/Run/PiseApplication/chips.pm blib/lib/Bio/Tools/Run/PiseApplication/chips.pm
cp Bio/Tools/Run/PiseApplication/consensus.pm blib/lib/Bio/Tools/Run/PiseApplication/consensus.pm
cp Bio/Tools/Run/PiseApplication/stssearch.pm blib/lib/Bio/Tools/Run/PiseApplication/stssearch.pm
cp Bio/Tools/Run/EMBOSSacd.pm blib/lib/Bio/Tools/Run/EMBOSSacd.pm
cp Bio/Tools/Run/PiseApplication/drawgram.pm blib/lib/Bio/Tools/Run/PiseApplication/drawgram.pm
cp Bio/Tools/Run/PiseApplication/psiblast.pm blib/lib/Bio/Tools/Run/PiseApplication/psiblast.pm
cp Bio/Tools/Run/AnalysisFactory/Pise.pm blib/lib/Bio/Tools/Run/AnalysisFactory/Pise.pm
cp Bio/Tools/Run/PiseApplication/blimps_matrix.pm blib/lib/Bio/Tools/Run/PiseApplication/blimps_matrix.pm
cp Bio/Tools/Run/PiseApplication/msa.pm blib/lib/Bio/Tools/Run/PiseApplication/msa.pm
cp Bio/Tools/Run/PiseApplication/diffseq.pm blib/lib/Bio/Tools/Run/PiseApplication/diffseq.pm
cp Bio/Tools/Run/PiseApplication/dan.pm blib/lib/Bio/Tools/Run/PiseApplication/dan.pm
cp Bio/Tools/Run/PiseApplication/prettyplot.pm blib/lib/Bio/Tools/Run/PiseApplication/prettyplot.pm
cp Bio/Tools/Run/PiseApplication/banana.pm blib/lib/Bio/Tools/Run/PiseApplication/banana.pm
cp Bio/Tools/Run/PiseApplication/pam.pm blib/lib/Bio/Tools/Run/PiseApplication/pam.pm
cp Bio/Tools/Run/PiseApplication/fuzztran.pm blib/lib/Bio/Tools/Run/PiseApplication/fuzztran.pm
cp Bio/Tools/Run/Prints.pm blib/lib/Bio/Tools/Run/Prints.pm
cp Bio/Tools/Run/PiseApplication/trnascan.pm blib/lib/Bio/Tools/Run/PiseApplication/trnascan.pm
cp Bio/Tools/Run/PiseApplication/filtersites.pm blib/lib/Bio/Tools/Run/PiseApplication/filtersites.pm
cp Bio/Tools/Run/PiseApplication/splitter.pm blib/lib/Bio/Tools/Run/PiseApplication/splitter.pm
cp Bio/Tools/Run/PiseApplication/matcher.pm blib/lib/Bio/Tools/Run/PiseApplication/matcher.pm
cp Bio/Tools/Run/PiseApplication/decorate.pm blib/lib/Bio/Tools/Run/PiseApplication/decorate.pm
cp Bio/Tools/Run/Alignment/TCoffee.pm blib/lib/Bio/Tools/Run/Alignment/TCoffee.pm
cp Bio/Tools/Run/PiseApplication/primersearch.pm blib/lib/Bio/Tools/Run/PiseApplication/primersearch.pm
cp Bio/Tools/Run/Phylo/PAML/Yn00.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Yn00.pm
cp Bio/Tools/Run/PiseApplication/whichdb.pm blib/lib/Bio/Tools/Run/PiseApplication/whichdb.pm
cp Bio/Tools/Run/PiseApplication/showalign.pm blib/lib/Bio/Tools/Run/PiseApplication/showalign.pm
cp Bio/Tools/Run/PiseApplication/hmmconvert.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmconvert.pm
cp Bio/Tools/Run/PiseApplication/trimest.pm blib/lib/Bio/Tools/Run/PiseApplication/trimest.pm
cp Bio/Tools/Run/PiseApplication/cutseq.pm blib/lib/Bio/Tools/Run/PiseApplication/cutseq.pm
cp Bio/Tools/Run/PiseApplication/pdbsearch.pm blib/lib/Bio/Tools/Run/PiseApplication/pdbsearch.pm
cp Bio/Tools/Run/PiseApplication/iep.pm blib/lib/Bio/Tools/Run/PiseApplication/iep.pm
cp Bio/Tools/Run/PiseApplication/dssp.pm blib/lib/Bio/Tools/Run/PiseApplication/dssp.pm
cp Bio/Tools/Run/PiseApplication/clustalw_convert.pm blib/lib/Bio/Tools/Run/PiseApplication/clustalw_convert.pm
cp Bio/Tools/Run/PiseApplication/CSR.pm blib/lib/Bio/Tools/Run/PiseApplication/CSR.pm
cp Bio/Factory/EMBOSS.pm blib/lib/Bio/Factory/EMBOSS.pm
cp Bio/Tools/Run/PiseApplication/satellites.pm blib/lib/Bio/Tools/Run/PiseApplication/satellites.pm
cp Bio/Tools/Run/PiseApplication/addquart.pm blib/lib/Bio/Tools/Run/PiseApplication/addquart.pm
cp Bio/Tools/Run/TribeMCL.pm blib/lib/Bio/Tools/Run/TribeMCL.pm
cp Bio/Tools/Run/PiseApplication/newcpgseek.pm blib/lib/Bio/Tools/Run/PiseApplication/newcpgseek.pm
cp Bio/Tools/Run/PiseApplication/assp.pm blib/lib/Bio/Tools/Run/PiseApplication/assp.pm
cp Bio/Tools/Run/PiseApplication/megamerger.pm blib/lib/Bio/Tools/Run/PiseApplication/megamerger.pm
cp Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/SeqBoot.pm
cp Bio/Tools/Run/PiseApplication/hmmcalibrate.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmcalibrate.pm
cp Bio/Tools/Run/PiseApplication/water.pm blib/lib/Bio/Tools/Run/PiseApplication/water.pm
cp Bio/Tools/Run/PiseApplication/blast2.pm blib/lib/Bio/Tools/Run/PiseApplication/blast2.pm
cp Bio/Tools/Run/PiseApplication/pepstats.pm blib/lib/Bio/Tools/Run/PiseApplication/pepstats.pm
cp Bio/Tools/Run/PiseApplication/readseq.pm blib/lib/Bio/Tools/Run/PiseApplication/readseq.pm
cp Bio/Tools/Run/PiseApplication/silent.pm blib/lib/Bio/Tools/Run/PiseApplication/silent.pm
cp Bio/Tools/Run/PiseApplication/mreps.pm blib/lib/Bio/Tools/Run/PiseApplication/mreps.pm
cp Bio/Tools/Run/PiseApplication/backtranseq.pm blib/lib/Bio/Tools/Run/PiseApplication/backtranseq.pm
cp Bio/Tools/Run/PiseApplication/syco.pm blib/lib/Bio/Tools/Run/PiseApplication/syco.pm
cp Bio/Tools/Run/PiseApplication/gff2ps.pm blib/lib/Bio/Tools/Run/PiseApplication/gff2ps.pm
cp Bio/Tools/Run/PiseApplication/getorf.pm blib/lib/Bio/Tools/Run/PiseApplication/getorf.pm
cp Bio/Tools/Run/PiseApplication/repeats.pm blib/lib/Bio/Tools/Run/PiseApplication/repeats.pm
cp Bio/Tools/Run/PiseApplication/restrict.pm blib/lib/Bio/Tools/Run/PiseApplication/restrict.pm
cp Bio/Tools/Run/PiseApplication/saps.pm blib/lib/Bio/Tools/Run/PiseApplication/saps.pm
cp Bio/Tools/Run/PiseApplication/sigcleave.pm blib/lib/Bio/Tools/Run/PiseApplication/sigcleave.pm
cp Bio/Tools/Run/PiseApplication/coderet.pm blib/lib/Bio/Tools/Run/PiseApplication/coderet.pm
cp Bio/Tools/Run/Seg.pm blib/lib/Bio/Tools/Run/Seg.pm
cp Bio/Tools/Run/PiseApplication/rnaheat.pm blib/lib/Bio/Tools/Run/PiseApplication/rnaheat.pm
cp Bio/Tools/Run/PiseApplication/interface.pm blib/lib/Bio/Tools/Run/PiseApplication/interface.pm
cp Bio/Tools/Run/PiseApplication/fasta.pm blib/lib/Bio/Tools/Run/PiseApplication/fasta.pm
cp Bio/Tools/Run/PiseApplication/extractfeat.pm blib/lib/Bio/Tools/Run/PiseApplication/extractfeat.pm
cp Bio/Tools/Run/PiseApplication/pestfind.pm blib/lib/Bio/Tools/Run/PiseApplication/pestfind.pm
cp Bio/Tools/Run/PiseApplication/emma.pm blib/lib/Bio/Tools/Run/PiseApplication/emma.pm
cp Bio/Tools/Run/PiseApplication/cai.pm blib/lib/Bio/Tools/Run/PiseApplication/cai.pm
cp Bio/Tools/Run/PiseApplication/hmoment.pm blib/lib/Bio/Tools/Run/PiseApplication/hmoment.pm
cp Bio/Tools/Run/PiseApplication/hmmsearch.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmsearch.pm
cp Bio/Tools/Run/Phylo/Phylip/Base.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/Base.pm
cp Bio/Tools/Run/Phylo/Phylip/DrawTree.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawTree.pm
cp Bio/Tools/Run/PiseApplication/stretcher.pm blib/lib/Bio/Tools/Run/PiseApplication/stretcher.pm
cp Bio/Tools/Run/PiseApplication/tmap.pm blib/lib/Bio/Tools/Run/PiseApplication/tmap.pm
cp Bio/Tools/Run/PiseApplication/tipdate.pm blib/lib/Bio/Tools/Run/PiseApplication/tipdate.pm
cp Bio/Tools/Run/PiseApplication/freak.pm blib/lib/Bio/Tools/Run/PiseApplication/freak.pm
cp Bio/Tools/Run/PiseApplication/domainer.pm blib/lib/Bio/Tools/Run/PiseApplication/domainer.pm
cp Bio/Tools/Run/PiseApplication/html4blast.pm blib/lib/Bio/Tools/Run/PiseApplication/html4blast.pm
cp Bio/Tools/Run/PiseApplication/prodom.pm blib/lib/Bio/Tools/Run/PiseApplication/prodom.pm
cp Bio/Tools/Run/Analysis.pm blib/lib/Bio/Tools/Run/Analysis.pm
cp Bio/Tools/Run/PiseApplication/stride.pm blib/lib/Bio/Tools/Run/PiseApplication/stride.pm
cp Bio/Tools/Run/PiseApplication/geecee.pm blib/lib/Bio/Tools/Run/PiseApplication/geecee.pm
cp Bio/Tools/Run/FootPrinter.pm blib/lib/Bio/Tools/Run/FootPrinter.pm
cp Bio/Tools/Run/PiseApplication/oddcomp.pm blib/lib/Bio/Tools/Run/PiseApplication/oddcomp.pm
cp Bio/Tools/Run/PiseApplication/druid.pm blib/lib/Bio/Tools/Run/PiseApplication/druid.pm
cp Bio/Tools/Run/Hmmpfam.pm blib/lib/Bio/Tools/Run/Hmmpfam.pm
cp Bio/Tools/Run/PiseApplication/dsc.pm blib/lib/Bio/Tools/Run/PiseApplication/dsc.pm
cp Bio/Tools/Run/PiseApplication/gruppi.pm blib/lib/Bio/Tools/Run/PiseApplication/gruppi.pm
cp Bio/Tools/Run/PiseApplication/prettyseq.pm blib/lib/Bio/Tools/Run/PiseApplication/prettyseq.pm
cp Bio/Tools/Run/PiseApplication/rnainverse.pm blib/lib/Bio/Tools/Run/PiseApplication/rnainverse.pm
cp Bio/Tools/Run/PiseApplication/rnaeval.pm blib/lib/Bio/Tools/Run/PiseApplication/rnaeval.pm
cp Bio/Tools/Run/PiseApplication/rnaga.pm blib/lib/Bio/Tools/Run/PiseApplication/rnaga.pm
cp Bio/Tools/Run/PiseApplication/seqboot.pm blib/lib/Bio/Tools/Run/PiseApplication/seqboot.pm
cp Bio/Tools/Run/PiseApplication/clique.pm blib/lib/Bio/Tools/Run/PiseApplication/clique.pm
cp Bio/Tools/Run/PiseApplication/pasteseq.pm blib/lib/Bio/Tools/Run/PiseApplication/pasteseq.pm
cp Bio/Tools/Run/PiseApplication/wise2.pm blib/lib/Bio/Tools/Run/PiseApplication/wise2.pm
cp Bio/Tools/Run/PiseApplication/scan_for_matches.pm blib/lib/Bio/Tools/Run/PiseApplication/scan_for_matches.pm
cp Bio/Tools/Run/Phylo/Phylip/Consense.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/Consense.pm
cp Bio/Tools/Run/PiseApplication/pftools.pm blib/lib/Bio/Tools/Run/PiseApplication/pftools.pm
cp Bio/Tools/Run/Profile.pm blib/lib/Bio/Tools/Run/Profile.pm
cp Bio/Tools/Run/PiseApplication/prophet.pm blib/lib/Bio/Tools/Run/PiseApplication/prophet.pm
cp Bio/Tools/Run/PiseApplication/plotcon.pm blib/lib/Bio/Tools/Run/PiseApplication/plotcon.pm
cp Bio/Tools/Run/Promoterwise.pm blib/lib/Bio/Tools/Run/Promoterwise.pm
cp Bio/Tools/Run/Phylo/PAML/Codeml.pm blib/lib/Bio/Tools/Run/Phylo/PAML/Codeml.pm
cp Bio/Tools/Run/PiseApplication/twofeat.pm blib/lib/Bio/Tools/Run/PiseApplication/twofeat.pm
cp Bio/Tools/Run/PiseApplication/modelfromalign.pm blib/lib/Bio/Tools/Run/PiseApplication/modelfromalign.pm
cp Bio/Tools/Run/Phylo/Phylip/ProtPars.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/ProtPars.pm
cp Bio/Tools/Run/PiseApplication/gibbs_scan.pm blib/lib/Bio/Tools/Run/PiseApplication/gibbs_scan.pm
cp Bio/Tools/Run/PiseApplication/kitsch.pm blib/lib/Bio/Tools/Run/PiseApplication/kitsch.pm
cp Bio/Tools/Run/Tmhmm.pm blib/lib/Bio/Tools/Run/Tmhmm.pm
cp Bio/Tools/Run/PiseApplication/sampleseqs.pm blib/lib/Bio/Tools/Run/PiseApplication/sampleseqs.pm
cp Bio/Tools/Run/PiseApplication/dca.pm blib/lib/Bio/Tools/Run/PiseApplication/dca.pm
cp Bio/Tools/Run/PiseApplication/nrscope.pm blib/lib/Bio/Tools/Run/PiseApplication/nrscope.pm
cp Bio/Tools/Run/PiseApplication/trimseq.pm blib/lib/Bio/Tools/Run/PiseApplication/trimseq.pm
cp Bio/Tools/Run/PiseApplication/hmmalign.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmalign.pm
cp Bio/Tools/Run/PiseApplication/prot_nucml.pm blib/lib/Bio/Tools/Run/PiseApplication/prot_nucml.pm
cp Bio/Tools/Run/PiseApplication/nthseq.pm blib/lib/Bio/Tools/Run/PiseApplication/nthseq.pm
cp Bio/Tools/Run/PiseApplication/rnapdist.pm blib/lib/Bio/Tools/Run/PiseApplication/rnapdist.pm
cp Bio/Tools/Run/PiseApplication/showfeat.pm blib/lib/Bio/Tools/Run/PiseApplication/showfeat.pm
cp Bio/Tools/Run/PiseApplication/map.pm blib/lib/Bio/Tools/Run/PiseApplication/map.pm
cp Bio/Tools/Run/PiseJobParser.pm blib/lib/Bio/Tools/Run/PiseJobParser.pm
cp Bio/Tools/Run/PiseApplication/octanol.pm blib/lib/Bio/Tools/Run/PiseApplication/octanol.pm
cp Bio/Tools/Run/PiseApplication/parciquart.pm blib/lib/Bio/Tools/Run/PiseApplication/parciquart.pm
cp Bio/Tools/Run/PiseApplication/lvb.pm blib/lib/Bio/Tools/Run/PiseApplication/lvb.pm
cp Bio/Tools/Run/Alignment/Lagan.pm blib/lib/Bio/Tools/Run/Alignment/Lagan.pm
cp Bio/Tools/Run/PiseApplication/seqsblast.pm blib/lib/Bio/Tools/Run/PiseApplication/seqsblast.pm
cp Bio/Tools/Run/PiseApplication/palindrome.pm blib/lib/Bio/Tools/Run/PiseApplication/palindrome.pm
cp Bio/Tools/Run/PiseApplication/blimps.pm blib/lib/Bio/Tools/Run/PiseApplication/blimps.pm
cp Bio/Tools/Run/PiseApplication/fuzzpro.pm blib/lib/Bio/Tools/Run/PiseApplication/fuzzpro.pm
cp Bio/Tools/Run/PiseApplication/hmmbuild.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmbuild.pm
cp Bio/Tools/Run/PiseApplication/bl2seq.pm blib/lib/Bio/Tools/Run/PiseApplication/bl2seq.pm
cp Bio/Tools/Run/PiseApplication/drawpyr.pm blib/lib/Bio/Tools/Run/PiseApplication/drawpyr.pm
cp Bio/Tools/Run/PiseApplication/siggen.pm blib/lib/Bio/Tools/Run/PiseApplication/siggen.pm
cp Bio/Tools/Run/PiseApplication/recoder.pm blib/lib/Bio/Tools/Run/PiseApplication/recoder.pm
cp Bio/Tools/Run/PiseApplication/consense.pm blib/lib/Bio/Tools/Run/PiseApplication/consense.pm
cp Bio/Tools/Run/PiseApplication/pepnet.pm blib/lib/Bio/Tools/Run/PiseApplication/pepnet.pm
cp Bio/Tools/Run/EMBOSSApplication.pm blib/lib/Bio/Tools/Run/EMBOSSApplication.pm
cp Bio/Tools/Run/PiseApplication/hmmscore.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmscore.pm
cp Bio/Tools/Run/PiseApplication/pscan.pm blib/lib/Bio/Tools/Run/PiseApplication/pscan.pm
cp Bio/Tools/Run/PiseApplication/compseq.pm blib/lib/Bio/Tools/Run/PiseApplication/compseq.pm
cp Bio/Tools/Run/PiseApplication/notseq.pm blib/lib/Bio/Tools/Run/PiseApplication/notseq.pm
cp Bio/Tools/Run/PiseApplication/dnadist.pm blib/lib/Bio/Tools/Run/PiseApplication/dnadist.pm
cp Bio/Tools/Run/PiseApplication/mfold.pm blib/lib/Bio/Tools/Run/PiseApplication/mfold.pm
cp Bio/Tools/Run/PiseApplication/alistat.pm blib/lib/Bio/Tools/Run/PiseApplication/alistat.pm
cp Bio/Tools/Run/PiseApplication/pars.pm blib/lib/Bio/Tools/Run/PiseApplication/pars.pm
cp Bio/Tools/Run/PiseApplication/patmatdb.pm blib/lib/Bio/Tools/Run/PiseApplication/patmatdb.pm
cp Bio/Tools/Run/PiseApplication/Puzzle.pm blib/lib/Bio/Tools/Run/PiseApplication/Puzzle.pm
cp Bio/Tools/Run/Genewise.pm blib/lib/Bio/Tools/Run/Genewise.pm
cp Bio/Tools/Run/PiseApplication/pepcoil.pm blib/lib/Bio/Tools/Run/PiseApplication/pepcoil.pm
cp Bio/Tools/Run/PiseApplication/hmmemit.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmemit.pm
cp Bio/Tools/Run/Primate.pm blib/lib/Bio/Tools/Run/Primate.pm
cp Bio/Tools/Run/PiseApplication/dollop.pm blib/lib/Bio/Tools/Run/PiseApplication/dollop.pm
cp Bio/Tools/Run/Phylo/Phylip/DrawGram.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/DrawGram.pm
cp Bio/Tools/Run/PiseApplication/distmat.pm blib/lib/Bio/Tools/Run/PiseApplication/distmat.pm
cp Bio/Tools/Run/PiseApplication/infoseq.pm blib/lib/Bio/Tools/Run/PiseApplication/infoseq.pm
cp Bio/Tools/Run/PiseApplication/patmatmotifs.pm blib/lib/Bio/Tools/Run/PiseApplication/patmatmotifs.pm
cp Bio/Tools/Run/PiseApplication/prose.pm blib/lib/Bio/Tools/Run/PiseApplication/prose.pm
cp Bio/Tools/Run/Signalp.pm blib/lib/Bio/Tools/Run/Signalp.pm
cp Bio/Tools/Run/PiseApplication/sam2hmmer.pm blib/lib/Bio/Tools/Run/PiseApplication/sam2hmmer.pm
cp Bio/Tools/Run/Eponine.pm blib/lib/Bio/Tools/Run/Eponine.pm
cp Bio/Tools/Run/PiseApplication/dottup.pm blib/lib/Bio/Tools/Run/PiseApplication/dottup.pm
cp Bio/Tools/Run/PiseApplication/codonw.pm blib/lib/Bio/Tools/Run/PiseApplication/codonw.pm
cp Bio/Tools/Run/Phylo/Molphy/ProtML.pm blib/lib/Bio/Tools/Run/Phylo/Molphy/ProtML.pm
cp Bio/Tools/Run/PiseApplication/mix.pm blib/lib/Bio/Tools/Run/PiseApplication/mix.pm
cp Bio/Tools/Run/PiseApplication/needle.pm blib/lib/Bio/Tools/Run/PiseApplication/needle.pm
cp Bio/Tools/Run/PiseApplication/xblast.pm blib/lib/Bio/Tools/Run/PiseApplication/xblast.pm
cp Bio/Tools/Run/PiseApplication/hmmfetch.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmfetch.pm
cp Bio/Tools/Run/PiseApplication/quicktree.pm blib/lib/Bio/Tools/Run/PiseApplication/quicktree.pm
cp Bio/Tools/Run/PiseApplication/revseq.pm blib/lib/Bio/Tools/Run/PiseApplication/revseq.pm
cp Bio/Tools/Run/PiseApplication/wordmatch.pm blib/lib/Bio/Tools/Run/PiseApplication/wordmatch.pm
cp Bio/Tools/Run/PiseApplication/newcpgreport.pm blib/lib/Bio/Tools/Run/PiseApplication/newcpgreport.pm
cp Bio/Tools/Run/PiseApplication/mview_alig.pm blib/lib/Bio/Tools/Run/PiseApplication/mview_alig.pm
cp Bio/Tools/Run/PiseApplication/lgicsearch.pm blib/lib/Bio/Tools/Run/PiseApplication/lgicsearch.pm
cp Bio/Tools/Run/Phylo/Phylip/Neighbor.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/Neighbor.pm
cp Bio/Tools/Run/PiseApplication/bambe.pm blib/lib/Bio/Tools/Run/PiseApplication/bambe.pm
cp Bio/Tools/Run/PiseApplication/scopparse.pm blib/lib/Bio/Tools/Run/PiseApplication/scopparse.pm
cp Bio/Tools/Run/PiseApplication/plotorf.pm blib/lib/Bio/Tools/Run/PiseApplication/plotorf.pm
cp Bio/Tools/Run/PiseApplication/readnexus.pm blib/lib/Bio/Tools/Run/PiseApplication/readnexus.pm
cp Bio/Tools/Run/PiseApplication/mview_blast.pm blib/lib/Bio/Tools/Run/PiseApplication/mview_blast.pm
cp Bio/Tools/Run/PiseApplication/transeq.pm blib/lib/Bio/Tools/Run/PiseApplication/transeq.pm
cp Bio/Tools/Run/PiseApplication/wublast2.pm blib/lib/Bio/Tools/Run/PiseApplication/wublast2.pm
cp Bio/Tools/Run/PiseApplication/pyreval.pm blib/lib/Bio/Tools/Run/PiseApplication/pyreval.pm
cp Bio/Tools/Run/PiseApplication/bionj.pm blib/lib/Bio/Tools/Run/PiseApplication/bionj.pm
cp Bio/Tools/Run/Genscan.pm blib/lib/Bio/Tools/Run/Genscan.pm
cp Bio/Tools/Run/PiseApplication/pratt.pm blib/lib/Bio/Tools/Run/PiseApplication/pratt.pm
cp Bio/Tools/Run/PiseApplication/golden.pm blib/lib/Bio/Tools/Run/PiseApplication/golden.pm
cp Bio/Tools/Run/PiseApplication/grailclnt.pm blib/lib/Bio/Tools/Run/PiseApplication/grailclnt.pm
cp Bio/Tools/Run/PiseApplication/protdist.pm blib/lib/Bio/Tools/Run/PiseApplication/protdist.pm
cp Bio/Tools/Run/Alignment/Clustalw.pm blib/lib/Bio/Tools/Run/Alignment/Clustalw.pm
cp Bio/Tools/Run/PiseApplication/mspcrunch.pm blib/lib/Bio/Tools/Run/PiseApplication/mspcrunch.pm
cp Bio/Tools/Run/PiseApplication/unroot.pm blib/lib/Bio/Tools/Run/PiseApplication/unroot.pm
cp Bio/Tools/Run/PiseApplication/rnadistance.pm blib/lib/Bio/Tools/Run/PiseApplication/rnadistance.pm
cp Bio/Tools/Run/PiseApplication/cirdna.pm blib/lib/Bio/Tools/Run/PiseApplication/cirdna.pm
cp Bio/Tools/Run/PiseApplication/seqgen.pm blib/lib/Bio/Tools/Run/PiseApplication/seqgen.pm
cp Bio/Tools/Run/PiseApplication/blimps_block.pm blib/lib/Bio/Tools/Run/PiseApplication/blimps_block.pm
cp Bio/Tools/Run/PiseApplication/dotpath.pm blib/lib/Bio/Tools/Run/PiseApplication/dotpath.pm
cp Bio/Tools/Run/PiseApplication/fitch.pm blib/lib/Bio/Tools/Run/PiseApplication/fitch.pm
cp Bio/Tools/Run/PiseApplication/neighbor.pm blib/lib/Bio/Tools/Run/PiseApplication/neighbor.pm
cp Bio/Tools/Run/PiseApplication/tacg.pm blib/lib/Bio/Tools/Run/PiseApplication/tacg.pm
cp Bio/Tools/Run/PiseApplication/align2model.pm blib/lib/Bio/Tools/Run/PiseApplication/align2model.pm
cp Bio/Tools/Run/PiseApplication/patser.pm blib/lib/Bio/Tools/Run/PiseApplication/patser.pm
cp Bio/Tools/Run/Coil.pm blib/lib/Bio/Tools/Run/Coil.pm
cp Bio/Tools/Run/PiseApplication/homology.pm blib/lib/Bio/Tools/Run/PiseApplication/homology.pm
cp Bio/Tools/Run/PiseApplication/seqmatchall.pm blib/lib/Bio/Tools/Run/PiseApplication/seqmatchall.pm
cp Bio/Tools/Run/PiseApplication/pepwindow.pm blib/lib/Bio/Tools/Run/PiseApplication/pepwindow.pm
cp Bio/Tools/Run/PiseApplication/est2genome.pm blib/lib/Bio/Tools/Run/PiseApplication/est2genome.pm
cp Bio/Tools/Run/PiseApplication/hmmpfam.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmpfam.pm
cp Bio/Tools/Run/PiseApplication/nnssp.pm blib/lib/Bio/Tools/Run/PiseApplication/nnssp.pm
cp Bio/Tools/Run/PiseApplication/sigscan.pm blib/lib/Bio/Tools/Run/PiseApplication/sigscan.pm
cp Bio/Tools/Run/PiseApplication/maskfeat.pm blib/lib/Bio/Tools/Run/PiseApplication/maskfeat.pm
cp Bio/Tools/Run/PiseApplication/remap.pm blib/lib/Bio/Tools/Run/PiseApplication/remap.pm
cp Bio/Tools/Run/PiseApplication/hmmer2sam.pm blib/lib/Bio/Tools/Run/PiseApplication/hmmer2sam.pm
cp Bio/Tools/Run/PiseApplication/equicktandem.pm blib/lib/Bio/Tools/Run/PiseApplication/equicktandem.pm
cp Bio/Tools/Run/PiseApplication/charge.pm blib/lib/Bio/Tools/Run/PiseApplication/charge.pm
cp Bio/Tools/Run/PiseApplication/listor.pm blib/lib/Bio/Tools/Run/PiseApplication/listor.pm
cp Bio/Tools/Run/PiseApplication/checktrans.pm blib/lib/Bio/Tools/Run/PiseApplication/checktrans.pm
cp Bio/Tools/Run/PiseApplication/cusp.pm blib/lib/Bio/Tools/Run/PiseApplication/cusp.pm
cp Bio/Tools/Run/PiseApplication/digest.pm blib/lib/Bio/Tools/Run/PiseApplication/digest.pm
cp Bio/Tools/Run/PiseApplication/seqstat.pm blib/lib/Bio/Tools/Run/PiseApplication/seqstat.pm
cp Bio/Tools/Run/PiseApplication/pyramids.pm blib/lib/Bio/Tools/Run/PiseApplication/pyramids.pm
cp Bio/Tools/Run/PiseApplication/polydot.pm blib/lib/Bio/Tools/Run/PiseApplication/polydot.pm
cp Bio/Tools/Run/PiseApplication/combat.pm blib/lib/Bio/Tools/Run/PiseApplication/combat.pm
cp Bio/Tools/Run/PiseApplication/treealign.pm blib/lib/Bio/Tools/Run/PiseApplication/treealign.pm
cp Bio/Tools/Run/PiseApplication/wobble.pm blib/lib/Bio/Tools/Run/PiseApplication/wobble.pm
cp Bio/Tools/Run/PiseApplication/antigenic.pm blib/lib/Bio/Tools/Run/PiseApplication/antigenic.pm
cp Bio/Tools/Run/PiseApplication/environ.pm blib/lib/Bio/Tools/Run/PiseApplication/environ.pm
cp Bio/Tools/Run/PiseApplication/showseq.pm blib/lib/Bio/Tools/Run/PiseApplication/showseq.pm
cp Bio/Tools/Run/PiseApplication/lindna.pm blib/lib/Bio/Tools/Run/PiseApplication/lindna.pm
cp Bio/Tools/Run/PiseApplication/pepinfo.pm blib/lib/Bio/Tools/Run/PiseApplication/pepinfo.pm
cp Bio/Tools/Run/PiseApplication/distquart.pm blib/lib/Bio/Tools/Run/PiseApplication/distquart.pm
cp Bio/Tools/Run/PiseApplication/comalign.pm blib/lib/Bio/Tools/Run/PiseApplication/comalign.pm
cp Bio/Tools/Run/PiseApplication/msbar.pm blib/lib/Bio/Tools/Run/PiseApplication/msbar.pm
cp Bio/Tools/Run/PiseApplication/infoalign.pm blib/lib/Bio/Tools/Run/PiseApplication/infoalign.pm
cp Bio/Tools/Run/PiseApplication/fastrna.pm blib/lib/Bio/Tools/Run/PiseApplication/fastrna.pm
cp Bio/Tools/Run/PiseApplication/rnasubopt.pm blib/lib/Bio/Tools/Run/PiseApplication/rnasubopt.pm
cp Bio/Tools/Run/RepeatMasker.pm blib/lib/Bio/Tools/Run/RepeatMasker.pm
cp Bio/Tools/Run/PiseApplication/einverted.pm blib/lib/Bio/Tools/Run/PiseApplication/einverted.pm
cp Bio/Tools/Run/Hmmer.pm blib/lib/Bio/Tools/Run/Hmmer.pm
cp Bio/Tools/Run/PiseApplication/cpgreport.pm blib/lib/Bio/Tools/Run/PiseApplication/cpgreport.pm
cp Bio/Tools/Run/PiseApplication/con_filter.pm blib/lib/Bio/Tools/Run/PiseApplication/con_filter.pm
cp Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm blib/lib/Bio/Tools/Run/Phylo/Phylip/PhylipConf.pm
cp Bio/Tools/Run/Analysis/soap.pm blib/lib/Bio/Tools/Run/Analysis/soap.pm
cp Bio/Tools/Run/PiseApplication/preg.pm blib/lib/Bio/Tools/Run/PiseApplication/preg.pm
Manifying blib/man3/Bio::Tools::Run::PiseApplication::boxshade.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::dnapars.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::prettyalign.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::drawtree.3
Manifying blib/man3/Bio::Tools::Run::Pseudowise.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::newseq.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::weighbor.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::tranalign.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::sreformat.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::fmtseq.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::most.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::prophecy.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::extractseq.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::clustalw.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::codcmp.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::findkm.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::dotmatcher.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::chaos.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::codnocod.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::isochore.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::makehist.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::predator.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::primo.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::fuzznuc.3
Manifying blib/man3/Bio::Tools::Run::Alignment::Sim4.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::shuffleseq.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::dreg.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::loadseq.3
Manifying blib/man3/Bio::Tools::Run::AnalysisFactory.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::etandem.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::supermatcher.3
Manifying blib/man3/Bio::Tools::Run::Primer3.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::btwisted.3
Manifying blib/man3/Bio::Tools::Run::Vista.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::confmat.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::merger.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::eprimer3.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::psort2.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::cap.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::fastdnaml.3
Manifying blib/man3/Bio::Tools::Run::Alignment::DBA.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::rnafold.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::qstar.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::protal2dna.3
Manifying blib/man3/Bio::Tools::Run::Mdust.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::protpars.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::pepwheel.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::phiblast.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::gibbs.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::getblock.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::xpound.3
Manifying blib/man3/Bio::Tools::Run::PiseWorkflow.3
Manifying blib/man3/Bio::Tools::Run::Alignment::StandAloneFasta.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::cds.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::mwfilter.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::degapseq.3
Manifying blib/man3/Bio::Tools::Run::AnalysisFactory::soap.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::njdist.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::showorf.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::lassap.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::redata.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::marscan.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::wordcount.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::descseq.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication.3
Manifying blib/man3/Bio::Tools::Run::PiseJob.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::cons.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::tfscan.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::toppred.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::emowse.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::genscan.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::cpgplot.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::vectorstrip.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::pima.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::maskseq.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::plsearch.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::helixturnhelix.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::scope.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::sirna.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::profit.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::dialign2.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::gb2xml.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::abiview.3
Manifying blib/man3/Bio::Tools::Run::Alignment::Blat.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::pepwindowall.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::melting.3
Manifying blib/man3/Bio::Tools::Run::Phylo::Phylip::ProtDist.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::codontree.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::restover.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::biosed.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::chips.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::consensus.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::stssearch.3
Manifying blib/man3/Bio::Tools::Run::EMBOSSacd.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::drawgram.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::psiblast.3
Manifying blib/man3/Bio::Tools::Run::AnalysisFactory::Pise.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::blimps_matrix.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::msa.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::diffseq.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::dan.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::prettyplot.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::banana.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::pam.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::fuzztran.3
Manifying blib/man3/Bio::Tools::Run::Prints.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::trnascan.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::filtersites.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::splitter.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::matcher.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::decorate.3
Manifying blib/man3/Bio::Tools::Run::Alignment::TCoffee.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::primersearch.3
Manifying blib/man3/Bio::Tools::Run::Phylo::PAML::Yn00.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::whichdb.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::showalign.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::hmmconvert.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::trimest.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::cutseq.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::pdbsearch.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::iep.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::dssp.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::clustalw_convert.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::CSR.3
Manifying blib/man3/Bio::Factory::EMBOSS.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::satellites.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::addquart.3
Manifying blib/man3/Bio::Tools::Run::TribeMCL.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::newcpgseek.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::assp.3
Manifying blib/man3/Bio::Tools::Run::PiseApplication::megamergemake: *** [manifypods] Hangup