Checking if your kit is complete...
Looks good
Writing Makefile for Bio::Tools::Prepeat
cp Prepeat.pm blib/lib/Bio/Tools/Prepeat.pm
/Users/cpanrun/pristine/5.8.7/bin/perl /Users/cpanrun/pristine/5.8.7/lib/5.8.7/ExtUtils/xsubpp  -typemap /Users/cpanrun/pristine/5.8.7/lib/5.8.7/ExtUtils/typemap  Prepeat.xs > Prepeat.xsc && mv Prepeat.xsc Prepeat.c
Please specify prototyping behavior for Prepeat.xs (see perlxs manual)
gcc -c   -fno-common -DPERL_DARWIN -no-cpp-precomp -arch ppc -arch i386 -nostdinc -B/Developer/SDKs/MacOSX10.4u.sdk/usr/include/gcc -B/Developer/SDKs/MacOSX10.4u.sdk/usr/lib/gcc -isystem/Developer/SDKs/MacOSX10.4u.sdk/usr/include -F/Developer/SDKs/MacOSX10.4u.sdk/System/Library/Frameworks -mmacosx-version-min=10.3 -DUSE_SITECUSTOMIZE -DNO_HASH_SEED -fno-strict-aliasing -pipe -O3   -DVERSION=\"0.06\" -DXS_VERSION=\"0.06\"  "-I/Users/cpanrun/pristine/5.8.7/lib/5.8.7/darwin-thread-multi-2level/CORE"   Prepeat.c
Running Mkbootstrap for Bio::Tools::Prepeat ()
chmod 644 Prepeat.bs
rm -f blib/arch/auto/Bio/Tools/Prepeat/Prepeat.bundle
LD_RUN_PATH="" env MACOSX_DEPLOYMENT_TARGET=10.3 cc  -bundle -undefined dynamic_lookup -arch ppc -arch i386 -Wl,-search_paths_first -Wl,-syslibroot,/Developer/SDKs/MacOSX10.4u.sdk -mmacosx-version-min=10.3 Prepeat.o  -o blib/arch/auto/Bio/Tools/Prepeat/Prepeat.bundle      
chmod 755 blib/arch/auto/Bio/Tools/Prepeat/Prepeat.bundle
cp Prepeat.bs blib/arch/auto/Bio/Tools/Prepeat/Prepeat.bs
chmod 644 blib/arch/auto/Bio/Tools/Prepeat/Prepeat.bs
Manifying blib/man3/Bio::Tools::Prepeat.3
PERL_DL_NONLAZY=1 /Users/cpanrun/pristine/5.8.7/bin/perl "-Iblib/lib" "-Iblib/arch" test.pl
1..11
# Running under perl version 5.008007 for darwin
# Current time local: Tue Jun 27 20:06:35 2006
# Current time GMT:   Wed Jun 28 03:06:35 2006
# Using Test.pm version 1.25

--- Protein sequence test ---
Initiating object                             ... ok 1
Feeding sequences                             ... ok 2
Building index                                ... Cannot open index file JL for writing
make: *** [test_dynamic] Error 24