Warning: prerequisite DBIx::DBSchema 0.34 not found. We have 0.31. Argument "2.0.0" isn't numeric in numeric lt (<) at /Users/cpanrun/build/5.8.8/lib/5.8.8/ExtUtils/MakeMaker.pm line 399. I will use the following settings for compiling and testing: testdriver (default) = Pg testdsn (default) = dbi:Pg:dbname=test testhost (default) = testpassword (default) = testrecreate (default) = dropdb test; createdb test testuser (default) = To change these settings, see 'perl Makefile.PL --help'. Checking if your kit is complete... Looks good Writing Makefile for DBIx Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) =================================== ** WARNING ** Could not connect using these parameters; test suite will probably fail install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t . /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl) at (eval 23) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at DBIx/DBStag.pm line 81 ...propagated at DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. cp DBIx/DBStag/Cookbook.pm blib/lib/DBIx/DBStag/Cookbook.pm cp DBIx/DBStag.pm blib/lib/DBIx/DBStag.pm cp DBIx/DBStag/Constraint.pm blib/lib/DBIx/DBStag/Constraint.pm cp DBIx/DBStag/SQLTemplate.pm blib/lib/DBIx/DBStag/SQLTemplate.pm cp scripts/selectall_html.pl blib/script/selectall_html.pl /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/selectall_html.pl cp scripts/stag-autoddl.pl blib/script/stag-autoddl.pl /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/stag-autoddl.pl cp scripts/selectall_xml.pl blib/script/selectall_xml.pl /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/selectall_xml.pl cp scripts/stag-template2bin.pl blib/script/stag-template2bin.pl /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/stag-template2bin.pl cp cgi-bin/ubiq.cgi blib/script/ubiq.cgi /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/ubiq.cgi cp scripts/stag-ir.pl blib/script/stag-ir.pl /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/stag-ir.pl cp scripts/stag-autotemplate.pl blib/script/stag-autotemplate.pl /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/stag-autotemplate.pl cp scripts/stag-storenode.pl blib/script/stag-storenode.pl /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/stag-storenode.pl cp scripts/stag-qsh blib/script/stag-qsh /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::MY" -e "MY->fixin(shift)" blib/script/stag-qsh Manifying blib/man1/stag-autotemplate.pl.1 Manifying blib/man1/selectall_html.pl.1 Manifying blib/man1/stag-autoddl.pl.1 Manifying blib/man1/selectall_xml.pl.1 Manifying blib/man1/stag-storenode.pl.1 Manifying blib/man1/stag-qsh.1 Manifying blib/man1/stag-ir.pl.1 Manifying blib/man3/DBIx::DBStag::Cookbook.3 Manifying blib/man3/DBIx::DBStag.3 Manifying blib/man3/DBIx::DBStag::Constraint.3 Manifying blib/man3/DBIx::DBStag::SQLTemplate.3 PERL_DL_NONLAZY=1 /Users/cpanrun/build/5.8.8/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/autoddl.......1..2 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:02 2007 # Current time GMT: Wed Sep 19 18:59:02 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test '(game (version "1") (seq (res "xxx") (seq_dbxref (dbxref (db "x") (acc "1")))) (annot (name "cg1") (fset (name "cg1-ra") (fspan (fstart "1") (fstop "2"))) (annot_dbxref (dbxref (db "x") (acc "2"))))) Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 21) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-2 Failed 2/2 tests, 0.00% okay t/bond..........1..5 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:05 2007 # Current time GMT: Wed Sep 19 18:59:05 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 21) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-5 Failed 5/5 tests, 0.00% okay t/cvterm........1..9 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:07 2007 # Current time GMT: Wed Sep 19 18:59:07 2007 # Using Test.pm version 1.25 "my" variable $chado masks earlier declaration in same scope at t/cvterm.t line 83. sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 19) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-9 Failed 9/9 tests, 0.00% okay t/feature.......1..5 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:10 2007 # Current time GMT: Wed Sep 19 18:59:10 2007 # Using Test.pm version 1.25 test feature.t takes a loooooong time, so I'm skipping it. if you want to run this test, set env DBSTAG_DEVELOPER_MODE ok 1 ok 2 ok 3 ok 4 ok 5 ok t/norm2.........1..5 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:10 2007 # Current time GMT: Wed Sep 19 18:59:10 2007 # Using Test.pm version 1.25 star wars sci-fi lucas george US han solo ford harrison princess leia fisher carrie luke skywalker hamill mark darth vader earl-jones james prowse david obi-wan kenobi guiness alec attack of the clones sci-fi lucas george US obi-wan kenobi mcgregor ewan princess amigdala portman natalie braindead horror jackson peter new zealand - - - lord of the rings fantasy jackson peter new zealand saruman lee christopher gandalf kellan ian seven samurai samurai kurosawa akira japan Kikuchiyo mifune toshiro terminator sci-fi cameron john US terminator schwarzenegger arnold terminator2 sci-fi cameron john US terminator schwarzenegger arnold barton fink odd coen joel US coen ethan US barton fink turturro john charlie meadows goodman john ok 1 ok 2 ok 3 '(schema (cols (col (relation "dir") (name "lname")) (col (relation "dir") (name "fname")) (col (relation "dir") (name "country")) (col (relation "movie") (name "name")) (col (relation "movie") (name "genre")) (col (relation "star") (name "lname")) (col (relation "star") (name "fname")) (col (relation "character") (name "name"))) (constraints (primarykey (relation "movie") (col "name")) (primarykey (relation "dir") (col "lname") (col "fname"))) (aliases (alias (name "dir") (table "person")) (alias (name "movie") (table "work"))) (top "mset") (nesting (movie (dir "1") (character (star "1"))))) '(dirset (dir (person (lname "lucas") (fname "george") (country "US") (movie (work (name "star wars") (genre "sci-fi") (star (lname "ford") (fname "harrison") (character (name "han solo"))) (star (lname "fisher") (fname "carrie") (character (name "princess leia"))) (star (lname "hamill") (fname "mark") (character (name "luke skywalker"))) (star (lname "earl-jones") (fname "james") (character (name "darth vader"))) (star (lname "prowse") (fname "david") (character (name "darth vader"))) (star (lname "guiness") (fname "alec") (character (name "obi-wan kenobi"))))) (movie (work (name "attack of the clones") (genre "sci-fi") (star (lname "mcgregor") (fname "ewan") (character (name "obi-wan kenobi"))) (star (lname "portman") (fname "natalie") (character (name "princess amigdala"))))))) (dir (person (lname "jackson") (fname "peter") (country "new zealand") (movie (work (name "braindead") (genre "horror") (star (lname "-") (fname "-") (character (name "-"))))) (movie (work (name "lord of the rings") (genre "fantasy") (star (lname "lee") (fname "christopher") (character (name "saruman"))) (star (lname "kellan") (fname "ian") (character (name "gandalf"))))))) (dir (person (lname "kurosawa") (fname "akira") (country "japan") (movie (work (name "seven samurai") (genre "samurai") (star (lname "mifune") (fname "toshiro") (character (name "Kikuchiyo"))))))) (dir (person (lname "cameron") (fname "john") (country "US") (movie (work (name "terminator") (genre "sci-fi") (star (lname "schwarzenegger") (fname "arnold") (character (name "terminator"))))) (movie (work (name "terminator2") (genre "sci-fi") (star (lname "schwarzenegger") (fname "arnold") (character (name "terminator"))))))) (dir (person (lname "coen") (fname "joel") (country "US") (movie (work (name "barton fink") (genre "odd") (star (lname "turturro") (fname "john") (character (name "barton fink"))) (star (lname "goodman") (fname "john") (character (name "charlie meadows"))))))) (dir (person (lname "coen") (fname "ethan") (country "US") (movie (work (name "barton fink") (genre "odd") (star (lname "turturro") (fname "john") (character (name "barton fink"))) (star (lname "goodman") (fname "john") (character (name "charlie meadows")))))))) ok 4 ok 5 ok t/norm3.........1..1 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:10 2007 # Current time GMT: Wed Sep 19 18:59:10 2007 # Using Test.pm version 1.25 '(schema (cols (col (relation "dir") (name "lname")) (col (relation "dir") (name "fname")) (col (relation "dir") (name "country")) (col (relation "movie") (name "name")) (col (relation "movie") (name "genre")) (col (relation "star") (name "lname")) (col (relation "star") (name "fname")) (col (relation "character") (name "name"))) (aliases (alias (name "dir") (table "person"))) (constraints (primarykey (relation "movie") (col "name")) (primarykey (relation "dir") (col "lname") (col "fname"))) (top "mset") (nesting (movie (dir "1") (character (star "1"))))) '(dirset (dir (person (lname "lucas") (fname "george") (country "US") (movie (name "star wars") (genre "sci-fi") (star (lname "ford") (fname "harrison") (character (name "han solo"))) (star (lname "fisher") (fname "carrie") (character (name "princess leia"))) (star (lname "hamill") (fname "mark") (character (name "luke skywalker"))) (star (lname "earl-jones") (fname "james") (character (name "darth vader"))) (star (lname "prowse") (fname "david") (character (name "darth vader"))) (star (lname "guiness") (fname "alec") (character (name "obi-wan kenobi")))) (movie (name "attack of the clones") (genre "sci-fi") (star (lname "mcgregor") (fname "ewan") (character (name "obi-wan kenobi"))) (star (lname "portman") (fname "natalie") (character (name "princess amigdala")))))) (dir (person (lname "jackson") (fname "peter") (country "new zealand") (movie (name "braindead") (genre "horror") (star (lname "-") (fname "-") (character (name "-")))) (movie (name "lord of the rings") (genre "fantasy") (star (lname "lee") (fname "christopher") (character (name "saruman"))) (star (lname "kellan") (fname "ian") (character (name "gandalf")))))) (dir (person (lname "kurosawa") (fname "akira") (country "japan") (movie (name "seven samurai") (genre "samurai") (star (lname "mifune") (fname "toshiro") (character (name "Kikuchiyo")))))) (dir (person (lname "cameron") (fname "john") (country "US") (movie (name "terminator") (genre "sci-fi") (star (lname "schwarzenegger") (fname "arnold") (character (name "terminator")))) (movie (name "terminator2") (genre "sci-fi") (star (lname "schwarzenegger") (fname "arnold") (character (name "terminator")))))) (dir (person (lname "coen") (fname "joel") (country "US") (movie (name "barton fink") (genre "odd") (star (lname "turturro") (fname "john") (character (name "barton fink"))) (star (lname "goodman") (fname "john") (character (name "charlie meadows")))))) (dir (person (lname "coen") (fname "ethan") (country "US") (movie (name "barton fink") (genre "odd") (star (lname "turturro") (fname "john") (character (name "barton fink"))) (star (lname "goodman") (fname "john") (character (name "charlie meadows"))))))) isa dog mammal isa cat mammal isa mammal animal isa zebra horse isa horse mammal isa unicorn horse isa unicorn imaginary-animal instance-of rover dog instance-of whiskers cat instance-of spot dog parent-of spot rover ok 1 ok t/normalize.....1..1 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:11 2007 # Current time GMT: Wed Sep 19 18:59:11 2007 # Using Test.pm version 1.25 star wars sci-fi ford harrison han solo fisher carrie princess leia hamill mark luke skywalker earl-jones james darth vader prowse david darth vader guiness alec obi-wan kenobi attack of the clones sci-fi mcgregor ewan obi-wan kenobi portman natalie princess amigdala braindead horror - - - lord of the rings fantasy lee christopher saruman kellan ian gandalf seven samurai samurai mifune toshiro Kikuchiyo terminator sci-fi schwarzenegger arnold terminator terminator2 sci-fi schwarzenegger arnold terminator barton fink odd turturro john barton fink goodman john charlie meadows star wars sci-fi lucas george US han solo ford harrison princess leia fisher carrie luke skywalker hamill mark darth vader earl-jones james prowse david obi-wan kenobi guiness alec attack of the clones sci-fi lucas george US obi-wan kenobi mcgregor ewan princess amigdala portman natalie braindead horror jackson peter new zealand - - - lord of the rings fantasy jackson peter new zealand saruman lee christopher gandalf kellan ian seven samurai samurai kurosawa akira japan Kikuchiyo mifune toshiro terminator sci-fi cameron john US terminator schwarzenegger arnold terminator2 sci-fi cameron john US terminator schwarzenegger arnold barton fink odd coen joel US coen ethan US barton fink turturro john charlie meadows goodman john isa dog mammal isa cat mammal isa mammal animal isa zebra horse isa horse mammal isa unicorn horse isa unicorn imaginary-animal instance-of rover dog instance-of whiskers cat instance-of spot dog parent-of spot rover ok 1 ok t/parsesql......1..26 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:12 2007 # Current time GMT: Wed Sep 19 18:59:12 2007 # Using Test.pm version 1.25 '(select (qual "") (cols (col (func (name "avg") (args (col (func (name "abs") (args (col (func (name "-") (args (col (name "exon.start") (table "exon")) (col (name "exon.end") (table "exon")))))))))) (alias "av"))) (from (leaf (name "x")))) ok 1 ok 2 T=x ok 3 '(select (qual "") (cols (col (func (name "avg") (args (col (func (name "abs") (args (col (name "y"))))))) (alias "av"))) (from (leaf (name "x")))) ok 4 ok 5 T=x ok 6 '(select (qual "") (cols (col (name "*"))) (from (composite (ctype "NATURAL JOIN") (first (leaf (name "f_type"))) (second (composite (ctype "ARRAY\(0x1a8d95c\) JOIN") (first (leaf (name "featureloc"))) (second (composite (ctype "NATURAL ARRAY\(0x1a9407c\) JOIN") (first (leaf (name "feature_relationship") (qual (type "on") (expr "bool_expr ARRAY\(0x1a9380c\)"))) ) (second (leaf (name "dbxref")))))))))) ok 7 ok 8 T=dbxref f_type feature_relationship featureloc ok 9 '(select (qual "") (cols (col (name "*"))) (from (composite (ctype "ARRAY\(0x1a990f0\) JOIN") (first (leaf (name "dna"))) (second (composite (ctype "NATURAL JOIN") (first (leaf (name "contig") (qual (type "using") (expr "cols ARRAY\(0x1a994f8\)")))) (second (leaf (name "z")))))))) ok 10 ok 11 T=contig dna z ok 12 '(select (qual "") (cols (col (name "*"))) (from (composite (ctype "ARRAY\(0x1a90824\) JOIN") (first (leaf (name "dna"))) (second (composite (ctype "ARRAY\(0x1a90d7c\) JOIN") (first (leaf (name "contig") (qual (type "using") (expr "cols ARRAY\(0x1a99990\)")))) (second (leaf (name "clone") (qual (type "using") (expr "cols ARRAY\(0x1a993c0\)"))))))))) ok 13 ok 14 T=clone contig dna ok 15 '(select (qual "") (cols (col (name "*"))) (from (composite (ctype "NATURAL JOIN") (first (leaf (name "x"))) (second (leaf (name "y")))))) ok 16 ok 17 x y ok 18 '(select (qual "") (cols (col (name "a")) (col (name "b") (alias "y"))) (from (leaf (name "x")))) ok 19 ok 20 '(select (qual "") (cols (col (func (name "somefunc") (args (col (name "x.foo") (table "x"))))) (col (func (name "func2") (args (col (name "bar"))))) (col (func (name "func3") (args (col (name "y")))) (alias "r"))) (from (leaf (name "x")))) ok 21 ok 22 ok 23 ok 24 '(select (qual "") (cols (col (name "transcript.name") (table "transcript")) (col (name "transcript_loc.nbeg") (table "transcript_loc")) (col (name "transcript_loc.nend") (table "transcript_loc")) (col (name "exon.name") (table "exon")) (col (name "exon_loc.nbeg") (table "exon_loc")) (col (name "exon_loc.nend") (table "exon_loc"))) (from (composite (ctype "ARRAY\(0x1a9af4c\) JOIN") (first (leaf (name "feature_relationship"))) (second (composite (ctype "ARRAY\(0x1aaab4c\) JOIN") (first (leaf (name "f_type") (alias "transcript") (qual (type "on") (expr "bool_expr ARRAY\(0x1aaadc8\)")))) (second (composite (ctype "ARRAY\(0x1aaa6cc\) JOIN") (first (leaf (name "featureloc") (alias "transcript_loc") (qual (type "on") (expr "bool_expr ARRAY\(0x1aaadec\)"))) ) (second (composite (ctype "ARRAY\(0x1aaae88\) JOIN") (first (leaf (name "f_type") (alias "exon") (qual (type "on") (expr "bool_expr ARRAY\(0x1aab200\)" )))) (second (leaf (name "featureloc") (alias "exon_loc") (qual (type "on") (expr "bool_expr ARRAY\(0x1aa4370\)" ))))))))))))) ok 25 '(select (qual "") (cols (col (name "F1.feature_id") (table "F1")) (col (name "F1.dbxrefstr") (table "F1")) (col (name "FL1.nbeg") (table "FL1")) (col (name "FL1.nend") (table "FL1"))) (from (composite (ctype "ARRAY\(0x1aab44c\) JOIN") (first (leaf (name "feature") (alias "F2"))) (second (composite (ctype ",") (first (leaf (name "featureloc") (alias "FL2") (qual (type "on") (expr "bool_expr ARRAY\(0x1aac2c8\)")))) (second (composite (ctype "ARRAY\(0x1a9948c\) JOIN") (first (leaf (name "feature") (alias "F1"))) (second (leaf (name "featureloc") (alias "FL1") (qual (type "on") (expr "bool_expr ARRAY\(0x1aa4d24\)"))) )))))))) ok 26 ok t/store1........1..2 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:15 2007 # Current time GMT: Wed Sep 19 18:59:15 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 19) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-2 Failed 2/2 tests, 0.00% okay t/store2........1..2 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:17 2007 # Current time GMT: Wed Sep 19 18:59:17 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 19) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-2 Failed 2/2 tests, 0.00% okay t/store2b.......1..2 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:20 2007 # Current time GMT: Wed Sep 19 18:59:20 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 19) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-2 Failed 2/2 tests, 0.00% okay t/store3........1..2 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:22 2007 # Current time GMT: Wed Sep 19 18:59:22 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 19) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-2 Failed 2/2 tests, 0.00% okay t/store4........1..4 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:24 2007 # Current time GMT: Wed Sep 19 18:59:24 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 19) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-4 Failed 4/4 tests, 0.00% okay t/store5........1..4 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:27 2007 # Current time GMT: Wed Sep 19 18:59:27 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 19) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-4 Failed 4/4 tests, 0.00% okay t/xort-style....1..3 # Running under perl version 5.008008 for darwin # Current time local: Wed Sep 19 11:59:29 2007 # Current time GMT: Wed Sep 19 18:59:29 2007 # Using Test.pm version 1.25 sh: line 1: dropdb: command not found sh: line 1: createdb: command not found PROBLEM recreating using: dropdb test;sleep 2; createdb test Could not connect to database: "dbi:Pg:dbname=test" EITHER The required DBD driver "Pg" is not installed OR There is no such database as "dbi:Pg:dbname=test" COULD NOT CONNECT USING DBI->connect(dbi:Pg:dbname=test ) install_driver(Pg) failed: Can't locate DBD/Pg.pm in @INC (@INC contains: t /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/arch /Users/cpanrun/depot/main/Apps/CPAN_Run/lib /Users/cpanrun/build/5.8.8/lib/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8/darwin-thread-multi-2level /Users/cpanrun/build/5.8.8/lib/site_perl/5.8.8 /Users/cpanrun/build/5.8.8/lib/site_perl .) at (eval 19) line 3. Perhaps the DBD::Pg perl module hasn't been fully installed, or perhaps the capitalisation of 'Pg' isn't right. Available drivers: DBM, ExampleP, File, Gofer, Proxy, Sponge. at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 81 ...propagated at /Users/cpanrun/depot/main/contrib-patched/perl/CPAN/src/DBIx-DBStag/blib/lib/DBIx/DBStag.pm line 120. ...propagated at t/DBStagTest.pm line 44. dubious Test returned status 2 (wstat 512, 0x200) DIED. FAILED tests 1-3 Failed 3/3 tests, 0.00% okay Failed Test Stat Wstat Total Fail List of Failed ------------------------------------------------------------------------------- t/autoddl.t 2 512 2 4 1-2 t/bond.t 2 512 5 10 1-5 t/cvterm.t 2 512 9 18 1-9 t/store1.t 2 512 2 4 1-2 t/store2.t 2 512 2 4 1-2 t/store2b.t 2 512 2 4 1-2 t/store3.t 2 512 2 4 1-2 t/store4.t 2 512 4 8 1-4 t/store5.t 2 512 4 8 1-4 t/xort-style.t 2 512 3 6 1-3 Failed 10/15 test scripts. 35/73 subtests failed. Files=15, Tests=73, 30 wallclock secs ( 7.55 cusr + 1.56 csys = 9.11 CPU) Failed 10/15 test programs. 35/73 subtests failed. make: *** [test_dynamic] Error 2