Checking if your kit is complete... Looks good Note (probably harmless): No library found for -lread Writing Makefile for Bio::SCF cp SCF.pm blib/lib/Bio/SCF.pm cp SCF/Arrays.pm blib/lib/Bio/SCF/Arrays.pm /home/cpanrun/ia64-lp64/build/5.8.2/bin/perl /home/cpanrun/ia64-lp64/build/5.8.2/lib/5.8.2/ExtUtils/xsubpp -typemap /home/cpanrun/ia64-lp64/build/5.8.2/lib/5.8.2/ExtUtils/typemap SCF.xs > SCF.xsc && mv SCF.xsc SCF.c Please specify prototyping behavior for SCF.xs (see perlxs manual) cc -c -D_POSIX_C_SOURCE=199506L -D_REENTRANT -Ae -D_HPUX_SOURCE -Wl,+vnocompatwarnings +DD64 -DNO_HASH_SEED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -fast +DSitanium2 +Ofltacc=strict -DVERSION=\"1.01\" -DXS_VERSION=\"1.01\" +Z "-I/home/cpanrun/ia64-lp64/build/5.8.2/lib/5.8.2/IA64.ARCHREV_0-thread-multi-LP64/CORE" -DLITTLE_ENDIAN SCF.c Error 112: "SCF.xs", line 12 # Include file not found. #include ^^^^^^^^^^^^^^ Error 112: "SCF.xs", line 13 # Include file not found. #include ^^^^^^^^^^^^^^^^ Error 538: "SCF.xs", line 27 # In order to have this sort of expression on the left hand side of an assignment, it must be surrounded with parentheses. Scf *scf_data = NULL; /* internal representation of data from ^^^^^^^^^^^^^ Error 172: "SCF.xs", line 27 # Undeclared variable 'Scf'. Scf *scf_data = NULL; /* internal representation of data from ^^^ Error 172: "SCF.xs", line 55 # Undeclared variable 'scf_data'. if ( (scf_data = read_scf(file_name)) == NULL ) ^^^^^^^^ Error 172: "SCF.xs", line 57 # Undeclared variable 'scf_data'. ret_val = newSViv((int)scf_data); ^^^^^^^ Error 538: "SCF.xs", line 66 # In order to have this sort of expression on the left hand side of an assignment, it must be surrounded with parentheses. Scf *scf_data = NULL; /* internal representation of data read ^^^^^^^^^^^^^ Error 172: "SCF.xs", line 66 # Undeclared variable 'Scf'. Scf *scf_data = NULL; /* internal representation of data read ^^^ Error 172: "SCF.xs", line 68 # Undeclared variable 'mFILE'. mFILE *mf; ^^^^^ Error 172: "SCF.xs", line 75 # Undeclared variable 'mf'. mf = mfreopen(NULL,"r",file_handle); ^^ Error 172: "SCF.xs", line 76 # Undeclared variable 'mf'. if (mf == NULL) ^^ Error 172: "SCF.xs", line 78 # Undeclared variable 'scf_data'. if ( (scf_data = mfread_scf(mf)) == NULL ) ^^^^^^^^ Error 699: "SCF.xs", line 78 # Error limit reached; halting compilation. if ( (scf_data = mfread_scf(mf)) == NULL ) ^^^^^^^^ make: *** [SCF.o] Error 2