** Bio::GMOD::Monitor Tests ** Do you want to run the Bio::GMOD::Monitor::* tests (further configuration follows) y/n [n] n ---------------------------------------------- Bio::GMOD File Paths BIN /usr/local/bin NONROOT MOD CGIBIN (Run perl Makefile.PL -h for help on changing) ---------------------------------------------- Warning: prerequisite LWP::UserAgent 2.023 not found at /export/home/cpanrun/build/5.6.1/lib/5.6.1/ExtUtils/MakeMaker.pm line 343. Warning: prerequisite Net::SMTP 2.26 not found at /export/home/cpanrun/build/5.6.1/lib/5.6.1/ExtUtils/MakeMaker.pm line 343. Checking if your kit is complete... Looks good 'INSTALLSITEMAN1DIR' is not a known MakeMaker parameter name. 'INSTALLSITEMAN3DIR' is not a known MakeMaker parameter name. Writing Makefile for Bio::GMOD cp GMOD/Admin/Update/WormBase.pm blib/lib/Bio/GMOD/Admin/Update/WormBase.pm cp GMOD.pm blib/lib/Bio/GMOD.pm cp GMOD/Adaptor/SGD.pm blib/lib/Bio/GMOD/Adaptor/SGD.pm cp GMOD/Admin/Archive.pm blib/lib/Bio/GMOD/Admin/Archive.pm cp GMOD/Adaptor/FlyBase.pm blib/lib/Bio/GMOD/Adaptor/FlyBase.pm cp GMOD/Adaptor/WormBase.pm blib/lib/Bio/GMOD/Adaptor/WormBase.pm cp GMOD/Util/Mirror.pm blib/lib/Bio/GMOD/Util/Mirror.pm cp GMOD/Admin/Monitor/acedb.pm blib/lib/Bio/GMOD/Admin/Monitor/acedb.pm cp GMOD/Admin/Archive/WormBase.pm blib/lib/Bio/GMOD/Admin/Archive/WormBase.pm cp GMOD/Adaptor.pm blib/lib/Bio/GMOD/Adaptor.pm cp GMOD/Util/Status.pm blib/lib/Bio/GMOD/Util/Status.pm cp GMOD/Admin/Monitor/WormBase.pm blib/lib/Bio/GMOD/Admin/Monitor/WormBase.pm cp GMOD/Admin/Monitor/mysqld.pm blib/lib/Bio/GMOD/Admin/Monitor/mysqld.pm cp GMOD/Query/FlyBase.pm blib/lib/Bio/GMOD/Query/FlyBase.pm cp GMOD/Admin/Monitor/blat.pm blib/lib/Bio/GMOD/Admin/Monitor/blat.pm cp GMOD/Admin/Monitor.pm blib/lib/Bio/GMOD/Admin/Monitor.pm cp GMOD/Util/CheckVersions/WormBase.pm blib/lib/Bio/GMOD/Util/CheckVersions/WormBase.pm cp GMOD/Admin/Update.pm blib/lib/Bio/GMOD/Admin/Update.pm cp GMOD/Admin/Monitor/httpd.pm blib/lib/Bio/GMOD/Admin/Monitor/httpd.pm cp GMOD/Util/CheckVersions.pm blib/lib/Bio/GMOD/Util/CheckVersions.pm cp GMOD/Adaptor/generic.pm blib/lib/Bio/GMOD/Adaptor/generic.pm cp GMOD/Util/Rearrange.pm blib/lib/Bio/GMOD/Util/Rearrange.pm cp GMOD/Query/WormBase.pm blib/lib/Bio/GMOD/Query/WormBase.pm cp GMOD/Query.pm blib/lib/Bio/GMOD/Query.pm cp GMOD/StandardURLs.pm blib/lib/Bio/GMOD/StandardURLs.pm /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 bin/gmod_standard_urls.PLS bin/gmod_standard_urls.pl Extracting gmod_standard_urls.pl (with variable substitutions) cp bin/gmod_standard_urls.pl blib/script/gmod_standard_urls.pl /export/home/cpanrun/build/5.6.1/bin/perl -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 -MExtUtils::MakeMaker -e "MY->fixin(shift)" blib/script/gmod_standard_urls.pl /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 bin/gmod_update_installation-wormbase.PLS bin/gmod_update_installation-wormbase.pl Extracting gmod_update_installation-wormbase.pl (with variable substitutions) cp bin/gmod_update_installation-wormbase.pl blib/script/gmod_update_installation-wormbase.pl /export/home/cpanrun/build/5.6.1/bin/perl -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 -MExtUtils::MakeMaker -e "MY->fixin(shift)" blib/script/gmod_update_installation-wormbase.pl /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 bin/gmod_monitor_installation.PLS bin/gmod_monitor_installation.pl Extracting gmod_monitor_installation.pl (with variable substitutions) cp bin/gmod_monitor_installation.pl blib/script/gmod_monitor_installation.pl /export/home/cpanrun/build/5.6.1/bin/perl -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 -MExtUtils::MakeMaker -e "MY->fixin(shift)" blib/script/gmod_monitor_installation.pl /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 bin/gmod_update_installation.PLS bin/gmod_update_installation.pl Extracting gmod_update_installation.pl (with variable substitutions) cp bin/gmod_update_installation.pl blib/script/gmod_update_installation.pl /export/home/cpanrun/build/5.6.1/bin/perl -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 -MExtUtils::MakeMaker -e "MY->fixin(shift)" blib/script/gmod_update_installation.pl /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 bin/gmod_fetch_genes.PLS bin/gmod_fetch_genes.pl Extracting gmod_fetch_genes.pl (with variable substitutions) cp bin/gmod_fetch_genes.pl blib/script/gmod_fetch_genes.pl /export/home/cpanrun/build/5.6.1/bin/perl -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 -MExtUtils::MakeMaker -e "MY->fixin(shift)" blib/script/gmod_fetch_genes.pl /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 bin/gmod_check_versions.PLS bin/gmod_check_versions.pl Extracting gmod_check_versions.pl (with variable substitutions) cp bin/gmod_check_versions.pl blib/script/gmod_check_versions.pl /export/home/cpanrun/build/5.6.1/bin/perl -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 -MExtUtils::MakeMaker -e "MY->fixin(shift)" blib/script/gmod_check_versions.pl /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 bin/gmod_monitor_installation-wormbase.PLS bin/gmod_monitor_installation-wormbase.pl Extracting gmod_monitor_installation-wormbase.pl (with variable substitutions) cp bin/gmod_monitor_installation-wormbase.pl blib/script/gmod_monitor_installation-wormbase.pl /export/home/cpanrun/build/5.6.1/bin/perl -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 -MExtUtils::MakeMaker -e "MY->fixin(shift)" blib/script/gmod_monitor_installation-wormbase.pl Manifying blib/man3/Bio::GMOD::Admin::Update::WormBase.3 Manifying blib/man3/Bio::GMOD.3 Manifying blib/man3/Bio::GMOD::Adaptor::SGD.3 Manifying blib/man3/Bio::GMOD::Admin::Archive.3 Manifying blib/man3/Bio::GMOD::Adaptor::FlyBase.3 Manifying blib/man3/Bio::GMOD::Adaptor::WormBase.3 Manifying blib/man1/gmod_fetch_genes.pl.1 Manifying blib/man1/gmod_monitor_installation-wormbase.pl.1 Manifying blib/man3/Bio::GMOD::Util::Mirror.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor::acedb.3 Manifying blib/man3/Bio::GMOD::Admin::Archive::WormBase.3 Manifying blib/man3/Bio::GMOD::Adaptor.3 Manifying blib/man1/gmod_monitor_installation.pl.1 Manifying blib/man3/Bio::GMOD::Util::Status.3 Manifying blib/man1/gmod_update_installation.pl.1 Manifying blib/man1/gmod_check_versions.pl.1 Manifying blib/man3/Bio::GMOD::Admin::Monitor::WormBase.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor::mysqld.3 Manifying blib/man3/Bio::GMOD::Query::FlyBase.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor::blat.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor.3 Manifying blib/man3/Bio::GMOD::Util::CheckVersions::WormBase.3 Manifying blib/man3/Bio::GMOD::Admin::Update.3 Manifying blib/man3/Bio::GMOD::Admin::Monitor::httpd.3 Manifying blib/man3/Bio::GMOD::Util::CheckVersions.3 Manifying blib/man3/Bio::GMOD::Adaptor::generic.3 Manifying blib/man1/gmod_update_installation-wormbase.pl.1 Manifying blib/man1/gmod_standard_urls.pl.1 Manifying blib/man3/Bio::GMOD::Util::Rearrange.3 Manifying blib/man3/Bio::GMOD::Query::WormBase.3 Manifying blib/man3/Bio::GMOD::Query.3 Manifying blib/man3/Bio::GMOD::StandardURLs.3 /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 cgi-bin/defaults.wormbase.PLS cgi-bin/defaults.wormbase Extracting defaults.wormbase (with variable substitutions) /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 cgi-bin/version.wormbase.PLS cgi-bin/version.wormbase Extracting version.wormbase (with variable substitutions) /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 install_util/cgi_install.PLS install_util/cgi_install.pl Extracting cgi_install.pl (with variable substitutions) PERL_DL_NONLAZY=1 /export/home/cpanrun/build/5.6.1/bin/perl -Iblib/arch -Iblib/lib -I/export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi -I/export/home/cpanrun/build/5.6.1/lib/5.6.1 -e 'use Test::Harness qw(&runtests $verbose); $verbose=0; runtests @ARGV;' t/*.t t/Adaptor...........ok t/Archive...........Subroutine create_archive redefined at blib/lib/Bio/GMOD/Admin/Archive.pm line 128. ok t/BioGMOD...........ok t/CheckVersions.....ok t/CheckVersionsWormBase.ok t/Mirror............[2005 Jul 22 14:12] Downloading file README... ok t/Query.............Useless use of string in void context at blib/lib/Bio/GMOD/Query.pm line 29. ok t/QueryWormBase..... # Failed test (t/QueryWormBase.t at line 33) # Tried to use 'Bio::GMOD::Query::WormBase'. # Error: Can't locate Ace.pm in @INC (@INC contains: t .. . ./blib/lib blib/arch blib/lib /export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi /export/home/cpanrun/build/5.6.1/lib/5.6.1 /export/home/cpanrun/depot/main/Apps/CPAN_Run/lib /export/home/cpanrun/build/5.6.1/lib/site_perl/5.6.1/sun4-solaris-thread-multi /export/home/cpanrun/build/5.6.1/lib/site_perl/5.6.1 /export/home/cpanrun/build/5.6.1/lib/site_perl) at blib/lib/Bio/GMOD/Query/WormBase.pm line 5. # BEGIN failed--compilation aborted at t/QueryWormBase.t line 33. # Compilation failed in require at (eval 3) line 2. # BEGIN failed--compilation aborted at (eval 3) line 2. # Looks like you failed 1 test of 1. dubious Test returned status 1 (wstat 256, 0x100) DIED. FAILED test 1 Failed 1/1 tests, 0.00% okay t/Rearrange.........ok t/StandardURLs......ok t/Status............ok t/Update............[2005 Jul 22 14:12] Creating temporary directory at t/tmpdir/WS144... [2005 Jul 22 14:12] Successfully created temporary directory... [2005 Jul 22 14:12] Sufficient space to install test (0.01 GB required; 11.99 GB available)... ok t/UpdateWormBase....ok t/acedb.............Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at blib/lib/Bio/GMOD/Admin/Monitor/acedb.pm line 7. Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at (eval 3) line 2. ok t/httpd.............Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at blib/lib/Bio/GMOD/Admin/Monitor/httpd.pm line 7. Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at (eval 3) line 2. ok t/mysqld............Can't locate package Bio::GMOD::Util::Email for @Bio::GMOD::Admin::Monitor::ISA at blib/lib/Bio/GMOD/Admin/Monitor/mysqld.pm line 6. # Failed test (t/mysqld.t at line 45) # Tried to use 'Bio::GMOD::Admin::Monitor::mysqld'. # Error: Can't locate DBI.pm in @INC (@INC contains: t .. . ./blib/lib blib/arch blib/lib /export/home/cpanrun/build/5.6.1/lib/5.6.1/sun4-solaris-thread-multi /export/home/cpanrun/build/5.6.1/lib/5.6.1 /export/home/cpanrun/depot/main/Apps/CPAN_Run/lib /export/home/cpanrun/build/5.6.1/lib/site_perl/5.6.1/sun4-solaris-thread-multi /export/home/cpanrun/build/5.6.1/lib/site_perl/5.6.1 /export/home/cpanrun/build/5.6.1/lib/site_perl) at blib/lib/Bio/GMOD/Admin/Monitor/mysqld.pm line 8. # BEGIN failed--compilation aborted at t/mysqld.t line 45. # Compilation failed in require at (eval 3) line 2. # BEGIN failed--compilation aborted at (eval 3) line 2. # Looks like you failed 1 test of 1. dubious Test returned status 1 (wstat 256, 0x100) DIED. FAILED test 1 Failed 1/1 tests, 0.00% okay Failed Test Status Wstat Total Fail Failed List of Failed -------------------------------------------------------------------------------- t/QueryWormBase.t 1 256 1 1 100.00% 1 t/mysqld.t 1 256 1 1 100.00% 1 Failed 2/16 test scripts, 87.50% okay. 2/60 subtests failed, 96.67% okay. make: *** [test_dynamic] Error 2