warning: **** $EMB_ROOT not set
Searching EMBOSS libraries in -L/lib -lnucleus -lajax -lajaxg -leplplot 
Searching EMBOSS headers in 
The system cannot find the path specified.
warning: **** $EMB_VERSION not set in Makefile.PL
Checking if your kit is complete...
Looks good
Note (probably harmless): No library found for '-lnucleus'
Note (probably harmless): No library found for '-lajax'
Note (probably harmless): No library found for '-lajaxg'
Note (probably harmless): No library found for '-leplplot'
Note (probably harmless): No library found for 'oldnames.lib'
Note (probably harmless): No library found for 'msvcrt.lib'
Writing Makefile for Bio::Emboss

Microsoft (R) Program Maintenance Utility   Version 6.00.8168.0
Copyright (C) Microsoft Corp 1988-1998. All rights reserved.

cp Emboss.pm blib\lib\Bio\Emboss.pm
cp lib/Bio/Emboss/Methods.pm blib\lib\Bio\Emboss\Methods.pm
	D:\cpanrun\build\5-6-1\bin\perl.exe scripts/get_boot_for_modules.pl Emboss_acd.xs  Emboss_align.xs  Emboss_arr.xs  Emboss_assert.xs  Emboss_base.xs  Emboss_call.xs  Emboss_cod.xs  Emboss_dan.xs  Emboss_dmx.xs  Emboss_domain.xs  Emboss_feat.xs  Emboss_file.xs  Emboss_fmt.xs  Emboss_graph.xs  Emboss_hist.xs  Emboss_index.xs  Emboss_list.xs  Emboss_math.xs  Emboss_matrices.xs  Emboss_mem.xs  Emboss_mess.xs  Emboss_nam.xs  Emboss_nexus.xs  Emboss_pdb.xs  Emboss_pdbio.xs  Emboss_phylo.xs  Emboss_range.xs  Emboss_reg.xs  Emboss_report.xs  Emboss_seq.xs  Emboss_seqabi.xs  Emboss_seqdb.xs  Emboss_seqread.xs  Emboss_seqtype.xs  Emboss_seqwrite.xs  Emboss_sort.xs  Emboss_str.xs  Emboss_sys.xs  Emboss_table.xs  Emboss_time.xs  Emboss_translate.xs  Emboss_tree.xs  Emboss_util.xs  Emboss_vector.xs  Emboss_embcom.xs  Emboss_embcons.xs  Emboss_embdata.xs  Emboss_embdbi.xs  Emboss_embdmx.xs  Emboss_embdomain.xs  Emboss_embest.xs  Emboss_embexit.xs  Emboss_embgroup.xs  Emboss_embiep.xs  Emboss_embindex.xs  Emboss_embinit.xs  Emboss_embmat.xs  Emboss_embmisc.xs  Emboss_embmol.xs  Emboss_embnmer.xs  Emboss_embpatlist.xs  Emboss_embpdb.xs  Emboss_embprop.xs  Emboss_embread.xs  Emboss_embshow.xs  Emboss_embword.xs  deprecated_Emboss_acd.xs  deprecated_Emboss_hist.xs  deprecated_Emboss_list.xs  deprecated_Emboss_seq.xs  deprecated_Emboss_seqwrite.xs  deprecated_Emboss_str.xs  deprecated_Emboss_sys.xs  deprecated_Emboss_table.xs  deprecated_Emboss_time.xs  deprecated_Emboss_util.xs
	D:\cpanrun\build\5-6-1\bin\perl.exe -Id:\cpanrun\build\5-6-1\lib -Id:\cpanrun\build\5-6-1\lib D:\cpanrun\build\5-6-1\lib\ExtUtils/xsubpp  -typemap D:\cpanrun\build\5-6-1\lib\ExtUtils\typemap -typemap typemap Emboss.xs > Emboss.xsc && D:\cpanrun\build\5-6-1\bin\perl.exe -Id:\cpanrun\build\5-6-1\lib -Id:\cpanrun\build\5-6-1\lib -MExtUtils::Command -e mv Emboss.xsc Emboss.c
	cl -c -I. -nologo -O1 -MD -Zi -DNDEBUG -DWIN32 -D_CONSOLE -DNO_STRICT -DHAVE_DES_FCRYPT -DPERL_IMPLICIT_CONTEXT -DPERL_IMPLICIT_SYS -DPERL_MSVCRT_READFIX -O1 -MD -Zi -DNDEBUG    -DVERSION=\"5.0.0.1\"  -DXS_VERSION=\"5.0.0.1\"  -ID:\cpanrun\build\5-6-1\lib\CORE  Emboss.c
Emboss.c
D:\cpanrun\build\5-6-1\lib\CORE\perl.h(441) : fatal error C1083: Cannot open include file: 'sys/types.h': No such file or directory
NMAKE : fatal error U1077: 'cl' : return code '0x2'
Stop.