Microsoft (R) Program Maintenance Utility   Version 7.00.8882
Copyright (C) Microsoft Corp 1988-2000. All rights reserved.

	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_heterogeneity_test.pl blib\script\bp_heterogeneity_test.pl
	pl2bat.bat blib\script\bp_heterogeneity_test.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_biogetseq.pl blib\script\bp_biogetseq.pl
	pl2bat.bat blib\script\bp_biogetseq.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_biblio.pl blib\script\bp_biblio.pl
	pl2bat.bat blib\script\bp_biblio.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_extract_feature_seq.pl blib\script\bp_extract_feature_seq.pl
	pl2bat.bat blib\script\bp_extract_feature_seq.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_process_gadfly.pl blib\script\bp_process_gadfly.pl
	pl2bat.bat blib\script\bp_process_gadfly.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_aacomp.pl blib\script\bp_aacomp.pl
	pl2bat.bat blib\script\bp_aacomp.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_nrdb.pl blib\script\bp_nrdb.pl
	pl2bat.bat blib\script\bp_nrdb.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_mrtrans.pl blib\script\bp_mrtrans.pl
	pl2bat.bat blib\script\bp_mrtrans.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_load_gff.pl blib\script\bp_load_gff.pl
	pl2bat.bat blib\script\bp_load_gff.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_process_sgd.pl blib\script\bp_process_sgd.pl
	pl2bat.bat blib\script\bp_process_sgd.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_gccalc.pl blib\script\bp_gccalc.pl
	pl2bat.bat blib\script\bp_gccalc.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_feature_draw.pl blib\script\bp_feature_draw.pl
	pl2bat.bat blib\script\bp_feature_draw.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_sreformat.pl blib\script\bp_sreformat.pl
	pl2bat.bat blib\script\bp_sreformat.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_oligo_count.pl blib\script\bp_oligo_count.pl
	pl2bat.bat blib\script\bp_oligo_count.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_translate_seq.pl blib\script\bp_translate_seq.pl
	pl2bat.bat blib\script\bp_translate_seq.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_flanks.pl blib\script\bp_flanks.pl
	pl2bat.bat blib\script\bp_flanks.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_index.pl blib\script\bp_index.pl
	pl2bat.bat blib\script\bp_index.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_seq_length.pl blib\script\bp_seq_length.pl
	pl2bat.bat blib\script\bp_seq_length.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_search2alnblocks.pl blib\script\bp_search2alnblocks.pl
	pl2bat.bat blib\script\bp_search2alnblocks.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_search2tribe.pl blib\script\bp_search2tribe.pl
	pl2bat.bat blib\script\bp_search2tribe.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_generate_histogram.pl blib\script\bp_generate_histogram.pl
	pl2bat.bat blib\script\bp_generate_histogram.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_dbsplit.pl blib\script\bp_dbsplit.pl
	pl2bat.bat blib\script\bp_dbsplit.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_composite_LD.pl blib\script\bp_composite_LD.pl
	pl2bat.bat blib\script\bp_composite_LD.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_filter_search.pl blib\script\bp_filter_search.pl
	pl2bat.bat blib\script\bp_filter_search.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_mutate.pl blib\script\bp_mutate.pl
	pl2bat.bat blib\script\bp_mutate.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_bioflat_index.pl blib\script\bp_bioflat_index.pl
	pl2bat.bat blib\script\bp_bioflat_index.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_seqconvert.pl blib\script\bp_seqconvert.pl
	pl2bat.bat blib\script\bp_seqconvert.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_local_taxonomydb_query.pl blib\script\bp_local_taxonomydb_query.pl
	pl2bat.bat blib\script\bp_local_taxonomydb_query.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_process_ncbi_human.pl blib\script\bp_process_ncbi_human.pl
	pl2bat.bat blib\script\bp_process_ncbi_human.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_fetch.pl blib\script\bp_fetch.pl
	pl2bat.bat blib\script\bp_fetch.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_search2gff.pl blib\script\bp_search2gff.pl
	pl2bat.bat blib\script\bp_search2gff.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_process_wormbase.pl blib\script\bp_process_wormbase.pl
	pl2bat.bat blib\script\bp_process_wormbase.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_fast_load_gff.pl blib\script\bp_fast_load_gff.pl
	pl2bat.bat blib\script\bp_fast_load_gff.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_split_seq.pl blib\script\bp_split_seq.pl
	pl2bat.bat blib\script\bp_split_seq.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_bulk_load_gff.pl blib\script\bp_bulk_load_gff.pl
	pl2bat.bat blib\script\bp_bulk_load_gff.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_pg_bulk_load_gff.pl blib\script\bp_pg_bulk_load_gff.pl
	pl2bat.bat blib\script\bp_pg_bulk_load_gff.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_blast2tree.pl blib\script\bp_blast2tree.pl
	pl2bat.bat blib\script\bp_blast2tree.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_chaos_plot.pl blib\script\bp_chaos_plot.pl
	pl2bat.bat blib\script\bp_chaos_plot.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_search2BSML.pl blib\script\bp_search2BSML.pl
	pl2bat.bat blib\script\bp_search2BSML.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_remote_blast.pl blib\script\bp_remote_blast.pl
	pl2bat.bat blib\script\bp_remote_blast.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_frend.pl blib\script\bp_frend.pl
	pl2bat.bat blib\script\bp_frend.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_mask_by_search.pl blib\script\bp_mask_by_search.pl
	pl2bat.bat blib\script\bp_mask_by_search.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_search_overview.pl blib\script\bp_search_overview.pl
	pl2bat.bat blib\script\bp_search_overview.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_genbank2gff.pl blib\script\bp_genbank2gff.pl
	pl2bat.bat blib\script\bp_genbank2gff.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_pairwise_kaks.pl blib\script\bp_pairwise_kaks.pl
	pl2bat.bat blib\script\bp_pairwise_kaks.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_biofetch_genbank_proxy.pl blib\script\bp_biofetch_genbank_proxy.pl
	pl2bat.bat blib\script\bp_biofetch_genbank_proxy.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe -MExtUtils::Command -e cp ./scripts_temp/bp_taxid4species.pl blib\script\bp_taxid4species.pl
	pl2bat.bat blib\script\bp_taxid4species.pl
	C:\cpanrun-5.8\build\5-8-0\bin\perl.exe "-MExtUtils::Command::MM" "-e" "test_harness(1, 'blib\lib', 'blib\arch')" t\AAChange.t t\AAReverseMutate.t t\AlignIO.t t\AlignStats.t t\Allele.t t\Alphabet.t t\Annotation.t t\AnnotationAdaptor.t t\Assembly.t t\Biblio.t t\Biblio_biofetch.t t\BiblioReferences.t t\BioDBGFF.t t\BioFetch_DB.t t\BioGraphics.t t\BlastIndex.t t\BPbl2seq.t t\BPlite.t t\BPpsilite.t t\Chain.t t\cigarstring.t t\ClusterIO.t t\Coalescent.t t\CodonTable.t t\consed.t t\CoordinateGraph.t t\CoordinateMapper.t t\Correlate.t t\CytoMap.t t\DB.t t\DBCUTG.t t\DBFasta.t t\DNAMutation.t t\Domcut.t t\ECnumber.t t\ELM.t t\EMBL_DB.t t\EMBOSS_Tools.t t\EncodedSeq.t t\ePCR.t t\ESEfinder.t t\est2genome.t t\Exception.t t\Exonerate.t t\flat.t t\FootPrinter.t t\game.t t\GDB.t t\GeneCoordinateMapper.t t\Geneid.t t\Genewise.t t\Genomewise.t t\Genpred.t t\GFF.t t\GOR4.t t\GOterm.t t\GuessSeqFormat.t t\hmmer.t t\HNN.t t\Index.t t\InstanceSite.t t\InterProParser.t t\IUPAC.t t\largefasta.t t\largepseq.t t\LinkageMap.t t\LiveSeq.t t\LocatableSeq.t t\Location.t t\LocationFactory.t t\LocusLink.t t\lucy.t t\Map.t t\MapIO.t t\Matrix.t t\Measure.t t\MeSH.t t\MetaSeq.t t\MicrosatelliteMarker.t t\MiniMIMentry.t t\MitoProt.t t\Molphy.t t\multiple_fasta.t t\Mutation.t t\Mutator.t t\NetPhos.t t\Node.t t\OddCodes.t t\OMIMentry.t t\OMIMentryAllelicVariant.t t\OMIMparser.t t\Ontology.t t\OntologyEngine.t t\PAML.t t\Perl.t t\phd.t t\Phenotype.t t\PhylipDist.t t\pICalculator.t t\Pictogram.t t\PopGen.t t\PopGenSims.t t\primaryqual.t t\PrimarySeq.t t\primedseq.t t\Primer.t t\primer3.t t\Promoterwise.t t\ProtDist.t t\psm.t t\QRNA.t t\qual.t t\RandDistFunctions.t t\RandomTreeFactory.t t\Range.t t\RangeI.t t\RefSeq.t t\Registry.t t\Relationship.t t\RelationshipType.t t\RemoteBlast.t t\RepeatMasker.t t\RestrictionAnalysis.t t\RestrictionEnzyme.t t\RestrictionIO.t t\RNAChange.t t\RootI.t t\RootIO.t t\RootStorable.t t\Scansite.t t\scf.t t\SearchDist.t t\SearchIO.t t\Seq.t t\SeqAnalysisParser.t t\SeqBuilder.t t\SeqDiff.t t\SeqFeatCollection.t t\SeqFeature.t t\seqfeaturePrimer.t t\SeqIO.t t\SeqPattern.t t\SeqStats.t t\SequenceFamily.t t\sequencetrace.t t\SeqUtils.t t\seqwithquality.t t\SeqWords.t t\Sigcleave.t t\Sim4.t t\SimilarityPair.t t\SimpleAlign.t t\simpleGOparser.t t\sirna.t t\SiteMatrix.t t\SNP.t t\Sopma.t t\Species.t t\splicedseq.t t\StandAloneBlast.t t\StructIO.t t\Structure.t t\Swiss.t t\Symbol.t t\Taxonomy.t t\Tempfile.t t\Term.t t\Tools.t t\Tree.t t\TreeIO.t t\trim.t t\tutorial.t t\UCSCParsers.t t\Unflattener.t t\Unflattener2.t t\UniGene.t t\Variation_IO.t t\WABA.t t\XEMBL_DB.t
t\AAChange...................1..25
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ok
t\AAReverseMutate............1..16
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t\AlignIO....................1..75
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t\AlignStats.................1..21
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t\Allele.....................1..15
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t\Alphabet...................1..90
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t\Annotation.................1..63
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t\AnnotationAdaptor..........1..21
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t\Assembly...................1..13
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ok 7 # no annotations in Annotation collection?
ok 8 # should return a number
ok 9
ok 10 # should return a number
ok 11
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ok 13 # nothing to test
ok
t\Biblio.....................1..24
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Reading and parsing MEDLINE XML file...
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Getting citations using callback...
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Reading and parsing XML string...
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Reading and parsing XML string handle...
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Reading and parsing PUBMED XML file...
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Testing FH
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ok
t\Biblio_biofetch............1..11
ok 1
ok 2 # No network access - could not connect to Medline
ok 3 # No network access - could not connect to Medline
ok 4 # No network access - could not connect to Medline
ok 5 # No network access - could not connect to Medline
ok 6 # No network access - could not connect to Medline
ok 7 # No network access - could not connect to Medline
ok 8 # No network access - could not connect to Medline
ok 9 # No network access - could not connect to Medline
ok 10 # No network access - could not connect to Medline
ok 11 # No network access - could not connect to Medline
ok
t\BiblioReferences...........1..537
Testing 'use Bio::Biblio:: ...'
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Testing 'new Bio::Biblio:: ...'
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Testing Bio::Biblio::MedlineJournalArticle ...
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Testing Bio::Biblio::MedlineBookArticle ...
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ok 297
ok 298
ok 299
ok 300
ok 301
ok 302
ok 303
ok 304
ok 305
ok 306
ok 307
ok 308
ok 309
ok 310
ok 311
ok 312
ok 313
ok 314
ok 315
ok 316
ok 317
ok 318
ok 319
ok 320
ok 321
ok 322
ok 323
ok 324
ok 325
ok 326
ok 327
ok 328
ok 329
ok 330
ok 331
ok 332
ok 333
ok 334
ok 335
ok 336
ok 337
ok 338
ok 339
ok 340
ok 341
ok 342
ok 343
ok 344
ok 345
ok 346
ok 347
ok 348
ok 349
Testing Bio::Biblio::MedlineBook ...
ok 350
ok 351
ok 352
ok 353
ok 354
ok 355
ok 356
ok 357
ok 358
ok 359
ok 360
ok 361
ok 362
ok 363
ok 364
ok 365
ok 366
ok 367
ok 368
ok 369
ok 370
ok 371
ok 372
ok 373
ok 374
ok 375
ok 376
ok 377
ok 378
ok 379
ok 380
ok 381
ok 382
ok 383
ok 384
ok 385
ok 386
ok 387
ok 388
ok 389
ok 390
ok 391
ok 392
ok 393
ok 394
ok 395
ok 396
ok 397
ok 398
ok 399
ok 400
ok 401
ok 402
ok 403
ok 404
ok 405
ok 406
ok 407
ok 408
ok 409
ok 410
ok 411
ok 412
ok 413
ok 414
ok 415
ok 416
ok 417
ok 418
ok 419
ok 420
ok 421
ok 422
ok 423
ok 424
ok 425
ok 426
ok 427
ok 428
ok 429
ok 430
ok 431
ok 432
ok 433
ok 434
ok 435
ok 436
Testing Bio::Biblio::MedlineJournal ...
ok 437
ok 438
ok 439
ok 440
ok 441
ok 442
ok 443
ok 444
ok 445
ok 446
ok 447
ok 448
ok 449
ok 450
ok 451
ok 452
ok 453
ok 454
ok 455
ok 456
ok 457
ok 458
ok 459
ok 460
ok 461
Testing Bio::Biblio::Patent ...
ok 462
ok 463
ok 464
ok 465
ok 466
ok 467
ok 468
ok 469
ok 470
ok 471
ok 472
Testing Bio::Biblio::WebResource ...
ok 473
ok 474
ok 475
ok 476
ok 477
ok 478
ok 479
ok 480
ok 481
ok 482
Testing Bio::Biblio::Person ...
ok 483
ok 484
ok 485
ok 486
ok 487
ok 488
ok 489
ok 490
ok 491
ok 492
ok 493
ok 494
ok 495
ok 496
ok 497
ok 498
ok 499
ok 500
ok 501
ok 502
ok 503
ok 504
ok 505
ok 506
ok 507
ok 508
ok 509
ok 510
ok 511
ok 512
ok 513
Testing Bio::Biblio::Organisation ...
ok 514
ok 515
ok 516
ok 517
ok 518
ok 519
ok 520
Testing Bio::Biblio::Service ...
ok 521
ok 522
ok 523
ok 524
ok 525
ok 526
ok 527
Testing Bio::Biblio::PubmedJournalArticle ...
ok 528
ok 529
ok 530
ok 531
ok 532
ok 533
ok 534
ok 535
ok 536
ok 537
ok
t\BioDBGFF...................1..133
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100 # fetch_feature_by_gid() not implemented by this adaptor
ok 101 # fetch_feature_by_gid() not implemented by this adaptor
ok 102
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108
ok 109
ok 110
ok 111
ok 112
ok 113
ok 114
ok 115
ok 116
ok 117
ok 118
ok 119
ok 120
ok 121
ok 122
ok 123
ok 124
ok 125
ok 126
ok 127
ok 128 # delete_groups() not implemented by this adaptor
ok 129 # delete_groups() not implemented by this adaptor
ok 130
ok 131
ok 132
ok 133
ok
t\BioFetch_DB................1..27
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
not ok 8
# Test 8 got: 'unknown id' (t\BioFetch_DB.t at line 79)
#   Expected: 'BUM'
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
not ok 20
# Test 20 got: '1611' (t\BioFetch_DB.t at line 116)
#    Expected: '408'
not ok 21
# Test 21 got: '408' (t\BioFetch_DB.t at line 117)
#    Expected: '1611'
ok 22
ok 23
ok 24
ok 25
ok 26
not ok 27
# Test 27 got: '3776' (t\BioFetch_DB.t at line 138)
#    Expected: '3775'
FAILED tests 8, 20-21, 27
	Failed 4/27 tests, 85.19% okay
t\BioGraphics................1..14
GD or Text::Shellwords modules are not installed. This means that Bio::Graphics module is unusable. Skipping tests.
ok 1 # unable to run all of the Bio::Graphics tests
ok 2 # unable to run all of the Bio::Graphics tests
ok 3 # unable to run all of the Bio::Graphics tests
ok 4 # unable to run all of the Bio::Graphics tests
ok 5 # unable to run all of the Bio::Graphics tests
ok 6 # unable to run all of the Bio::Graphics tests
ok 7 # unable to run all of the Bio::Graphics tests
ok 8 # unable to run all of the Bio::Graphics tests
ok 9 # unable to run all of the Bio::Graphics tests
ok 10 # unable to run all of the Bio::Graphics tests
ok 11 # unable to run all of the Bio::Graphics tests
ok 12 # unable to run all of the Bio::Graphics tests
ok 13 # unable to run all of the Bio::Graphics tests
ok 14 # unable to run all of the Bio::Graphics tests
ok
t\BlastIndex.................1..13
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok
t\BPbl2seq...................1..108
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101
ok 102
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108
ok
t\BPlite.....................1..97
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok
t\BPpsilite..................1..11
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok
t\Chain......................1..45
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok
t\cigarstring................1..3
ok 1
ok 2
ok 3
ok
t\ClusterIO..................1..12
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok
t\Coalescent.................1..11
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok
t\CodonTable.................1..38
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok
t\consed.....................1..16
ok 1 # Cannot run consed module on windows
ok 2 # Cannot run consed module on windows
ok 3 # Cannot run consed module on windows
ok 4 # Cannot run consed module on windows
ok 5 # Cannot run consed module on windows
ok 6 # Cannot run consed module on windows
ok 7 # Cannot run consed module on windows
ok 8 # Cannot run consed module on windows
ok 9 # Cannot run consed module on windows
ok 10 # Cannot run consed module on windows
ok 11 # Cannot run consed module on windows
ok 12 # Cannot run consed module on windows
ok 13 # Cannot run consed module on windows
ok 14 # Cannot run consed module on windows
ok 15 # Cannot run consed module on windows
ok 16 # Cannot run consed module on windows
ok
t\CoordinateGraph............1..7
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok
t\CoordinateMapper...........1..170
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101
ok 102
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108
ok 109
ok 110
ok 111
ok 112
ok 113
ok 114
ok 115
ok 116
ok 117
ok 118
ok 119
ok 120
ok 121
ok 122
ok 123
ok 124
ok 125
ok 126
ok 127
ok 128
ok 129
ok 130
ok 131
ok 132
ok 133
ok 134
ok 135
ok 136
ok 137
ok 138
ok 139
ok 140
ok 141
ok 142
ok 143
ok 144
ok 145
ok 146
ok 147
ok 148
ok 149
ok 150
ok 151
ok 152
ok 153
ok 154
ok 155
ok 156
ok 157
ok 158
ok 159
ok 160
ok 161
ok 162
ok 163
ok 164
ok 165
ok 166
ok 167
ok 168
ok 169
ok 170
ok
t\Correlate..................1..15
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok
t\CytoMap....................1..109
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok 38
ok 39
ok 40
ok 41
ok 42
ok 43
ok 44
ok 45
ok 46
ok 47
ok 48
ok 49
ok 50
ok 51
ok 52
ok 53
ok 54
ok 55
ok 56
ok 57
ok 58
ok 59
ok 60
ok 61
ok 62
ok 63
ok 64
ok 65
ok 66
ok 67
ok 68
ok 69
ok 70
ok 71
ok 72
ok 73
ok 74
ok 75
ok 76
ok 77
ok 78
ok 79
ok 80
ok 81
ok 82
ok 83
ok 84
ok 85
ok 86
ok 87
ok 88
ok 89
ok 90
ok 91
ok 92
ok 93
ok 94
ok 95
ok 96
ok 97
ok 98
ok 99
ok 100
ok 101
ok 102
ok 103
ok 104
ok 105
ok 106
ok 107
ok 108
ok 109
ok
t\DB.........................1..78
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
not ok 30
# Test 30 got: 'Bio::Seq::RichSeq=HASH(0x250bff4)' (t\DB.t at line 144)
#    Expected: 'O39869'
not ok 31
# Test 31 got: '9PICO' (t\DB.t at line 145)
#    Expected: 'UNK'
ok 32
ok 33
ok 34 # skip
ok 35
ok 36
ok 37
ok 38
ok 39 # could not connect to swissprot
ok 40 # could not connect to swissprot
ok 41 # could not connect to swissprot
ok 42 # could not connect to swissprot
ok 43 # could not connect to swissprot
ok 44 # could not connect to swissprot
ok 45 # could not connect to swissprot
ok 46 # could not connect to swissprot
ok 47 # could not connect to swissprot
ok 48 # could not connect to swissprot
ok 49 # could not connect to swissprot
ok 50 # could not connect to swissprot
ok 51 # could not connect to swissprot
ok 52 # could not connect to swissprot
ok 53 # could not connect to swissprot
ok 54 # could not connect to swissprot
ok 55 # could not connect to swissprot
ok 56 # could not connect to swissprot
ok 57 # could not connect to swissprot
ok 58 # could not connect to swissprot
ok 59 # could not connect to swissprot
ok 60 # could not connect to swissprot
ok 61 # could not connect to swissprot
ok 62 # could not connect to swissprot
ok 63 # could not connect to swissprot
ok 64 # could not connect to swissprot
ok 65 # could not connect to swissprot
ok 66 # could not connect to swissprot
ok 67 # could not connect to swissprot
ok 68 # could not connect to swissprot
ok 69 # could not connect to swissprot
ok 70 # could not connect to swissprot
ok 71 # could not connect to swissprot
ok 72 # could not connect to swissprot
ok 73 # could not connect to swissprot
ok 74 # could not connect to swissprot
ok 75 # could not connect to swissprot
ok 76 # could not connect to swissprot
ok 77 # could not connect to swissprot
ok 78 # could not connect to swissprot
FAILED tests 30-31
	Failed 2/78 tests, 97.44% okay (less 1 skipped test: 75 okay, 96.15%)
t\DBCUTG.....................1..22
ok 1
ok 2
ok 3 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 4 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 5 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 6 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 7 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 8 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 9 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 10 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 11 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 12 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 13 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 14 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 15 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 16 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 17 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 18 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 19 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 20 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 21 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 22 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok
        20/22 skipped: various reasons
t\DBFasta....................1..12
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok
t\DNAMutation................1..36
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok
t\Domcut.....................1..25
ok 1
ok 2
ok 3
ok 4 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 5 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 6 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 7 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 8 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 9 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 10 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 11 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 12 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 13 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 14 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 15 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 16 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 17 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 18 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 19 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 20 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 21 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 22 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 23 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 24 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 25 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok
        22/25 skipped: various reasons
t\ECnumber...................1..26
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok
t\ELM........................1..14
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9

-------------------- WARNING ---------------------
MSG: Bio::Tools::Analysis::Protein::ELM Request Error:
400 (Bad Request) URL must be absolute
Client-Date: Wed, 12 Mar 2008 05:27:22 GMT



---------------------------------------------------
ok 10
ok 11 # unable to run all of the tests depending on web access
ok 12 # unable to run all of the tests depending on web access
ok 13 # unable to run all of the tests depending on web access
ok 14 # unable to run all of the tests depending on web access
ok
t\EMBL_DB....................1..15
ok 1
ok 2
ok 3
ok 4
ok 5
not ok 6
# Test 6 got: 'embl|J02231|J02231' (t\EMBL_DB.t at line 67)
#   Expected: qr/(?-xism:embl.+BUM)/
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
not ok 13
# Test 13 got: '1611' (t\EMBL_DB.t at line 95)
#    Expected: '408'
not ok 14
# Test 14 got: '408' (t\EMBL_DB.t at line 96)
#    Expected: '1611'
ok 15
FAILED tests 6, 13-14
	Failed 3/15 tests, 80.00% okay
t\EMBOSS_Tools...............1..12
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok
t\EncodedSeq.................1..37
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok 24
ok 25
ok 26
ok 27
ok 28
ok 29
ok 30
ok 31
ok 32
ok 33
ok 34
ok 35
ok 36
ok 37
ok
t\ePCR.......................1..23
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok 12
ok 13
ok 14
ok 15
ok 16
ok 17
ok 18
ok 19
ok 20
ok 21
ok 22
ok 23
ok
t\ESEfinder..................1..12
ok 1
ok 2
ok 3 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 4 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 5 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 6 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 7 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 8 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 9 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 10 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 11 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
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ok
        10/12 skipped: various reasons
t\est2genome.................1..60
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ok
t\Exception..................1..8
ok 1
ok 2
Setting test data (Eeny meeny miney moe.)
ok 3
ok 4

Executing method bar() in TestObject
Throwing a Bio::TestException
ok 5
ok 6
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ok 8
ok
t\Exonerate..................1..45
ok 1
ok 2
ok 3 # no query length available in default output
ok 4
ok 5 # no hit length available in default output
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ok 25 # no query length available in default output
ok 26
ok 27 # no hit length available in default output
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ok
t\flat.......................1..16
ok 1
ok 2
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ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
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ok 13

------------- EXCEPTION  -------------
MSG: swissprot stream with no ID. Not swissprot in my book
STACK Bio::SeqIO::swiss::next_seq C:\cpanrun-5.8\depot\main\contrib-patched\perl\CPAN\src\bioperl\blib\lib/Bio\SeqIO\swiss.pm:179
STACK Bio::DB::Flat::BinarySearch::get_Seq_by_id C:\cpanrun-5.8\depot\main\contrib-patched\perl\CPAN\src\bioperl\blib\lib/Bio/DB/Flat/BinarySearch.pm:335
STACK toplevel t\flat.t:137

--------------------------------------
dubious
	Test returned status 255 (wstat 65280, 0xff00)
DIED. FAILED tests 14-16
	Failed 3/16 tests, 81.25% okay
t\FootPrinter................1..26
ok 1
ok 2
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ok
t\game.......................1..25
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ok
t\GDB........................1..11
ok 1 # GDB test skipped to avoid timeouts
ok 2 # GDB test skipped to avoid timeouts
ok 3 # GDB test skipped to avoid timeouts
ok 4 # GDB test skipped to avoid timeouts
ok 5 # GDB test skipped to avoid timeouts
ok 6 # GDB test skipped to avoid timeouts
ok 7 # GDB test skipped to avoid timeouts
ok 8 # GDB test skipped to avoid timeouts
ok 9 # GDB test skipped to avoid timeouts
ok 10 # GDB test skipped to avoid timeouts
ok 11 # GDB test skipped to avoid timeouts
ok
t\GeneCoordinateMapper.......1..113
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ok 71

-------------------- WARNING ---------------------
MSG: sorted sublocation array requested but root location doesn't define seq_id (at least one sublocation does!)
---------------------------------------------------

-------------------- WARNING ---------------------
MSG: sorted sublocation array requested but root location doesn't define seq_id (at least one sublocation does!)
---------------------------------------------------
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ok
t\Geneid.....................1..26
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ok
t\Genewise...................1..51
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ok 33 # skip
ok 34 # skip
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ok
        2/51 skipped: various reasons
t\Genomewise.................1..20
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ok
t\Genpred....................1..56
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ok
t\GFF........................1..32
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ok
t\GOR4.......................1..11
ok 1
ok 2
ok 3
ok 4 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 5 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 6 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 7 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 8 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 9 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 10 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 11 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok
        8/11 skipped: various reasons
t\GOterm.....................1..59
ok 1
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ok
t\GuessSeqFormat.............1..46
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ok
t\hmmer......................1..136
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ok
t\HNN........................1..13
ok 1
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ok 3
ok 4 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 5 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 6 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 7 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 8 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 9 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 10 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 11 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 12 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 13 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok
        10/13 skipped: various reasons
t\Index......................1..32
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ok
t\InstanceSite...............1..6
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ok
t\InterProParser.............1..47
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ok
t\IUPAC......................1..1
ok 1
ok
t\largefasta.................1..15
ok 1
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ok
t\largepseq..................1..22
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ok
t\LinkageMap.................1..16
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ok
t\LiveSeq....................1..48
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ok
t\LocatableSeq...............1..80
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ok
t\Location...................1..72
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ok
t\LocationFactory............1..177
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ok
t\LocusLink..................1..23
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ok
t\lucy.......................1..22
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ok
t\Map........................1..48
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ok
t\MapIO......................1..23
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ok
t\Matrix.....................1..64
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ok
t\Measure....................1..20
ok 1
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ok
t\MeSH.......................1..26
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ok
t\MetaSeq....................1..73
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ok
t\MicrosatelliteMarker.......1..6
ok 1
ok 2
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ok 6
ok
t\MiniMIMentry...............1..14
ok 1
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ok 11
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ok 14
ok
t\MitoProt...................1..8
ok 1
ok 2
ok 3
ok 4 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 5 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 6 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 7 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok 8 # Skipping tests which require remote servers - set env variable BIOPERLDEBUG to test
ok
        5/8 skipped: various reasons
t\Molphy.....................1..17
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ok
t\multiple_fasta.............1..8
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ok
t\Mutation...................1..18
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ok
t\Mutator....................1..13
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ok
t\NetPhos....................1..14
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